Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_C14
(557 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.46
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 27 1.9
SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit S14|... 27 2.5
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 26 4.3
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 4.3
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 25 5.7
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 25 5.7
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 25 5.7
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c... 25 7.5
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 7.5
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 25 10.0
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.1 bits (62), Expect = 0.46
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 146 PPPKNYDHIELPERQRL 196
PPP+N DH++LPE +L
Sbjct: 4076 PPPENEDHLDLPEDLKL 4092
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 27.1 bits (57), Expect = 1.9
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +2
Query: 146 PPPKNYDHIELPERQRLRVFDKVPLYPSNLKPPKMQ-KRLRYMRGPETVHNTLQLKQYGV 322
P P +E ++ R + ++PL+ S KPPK +++ R + N L K
Sbjct: 275 PRPPQPVAVEAIQQSRAVISQQLPLHVSPRKPPKPPLRKVSTQRSSSPIEN-LATKSDAS 333
Query: 323 VATGGGRMRYEHFEMA 370
+ TG Y H A
Sbjct: 334 LVTGLQSSPYTHIAPA 349
>SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit
S14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 161 YDHIELPERQRLRVFDKVPLYPSNLKPPKMQKR 259
Y + ELP R RL ++ P+N P K++ R
Sbjct: 35 YRNPELPLRVRLEAKKRIEALPTNAHPTKIKNR 67
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 410 TFSSCLISWLPLDAP 366
T+SS +SW PL+AP
Sbjct: 193 TYSSACMSWFPLNAP 207
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.8 bits (54), Expect = 4.3
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +1
Query: 313 IWCCCNWWW 339
IW CC W+W
Sbjct: 2068 IWACCLWYW 2076
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 5.7
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 140 YFPPPKNYDHIELPERQRLRVFDKVPLYPSNLKPPKMQKRLRYMRGPETVHNTLQL 307
+F P EL E Q + D P +P+ LK K K + P+T T+Q+
Sbjct: 57 HFQTPTKRIKYELGELQEEKT-DLYPNFPAQLKENKKPKLPTTPQTPKTPKRTIQI 111
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 152 PKNYDHIELPERQRLRVFDKVPLYPSNLKPPKMQK 256
PKNY ++ L+VFD V P L P QK
Sbjct: 346 PKNYAYVAKSTSPELKVFDTV--MPVALSPKPAQK 378
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.4 bits (53), Expect = 5.7
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = -1
Query: 281 QGHAYIEDVFAFLVVLNWKDKVGPCQKHVISVFQVIQYDHSFSVEENI*CLL*MLIVYPL 102
Q + Y + F+++ N GP + + + ++I+ + +V CLL +LI L
Sbjct: 750 QNYTYFDFKSEFIILQNSYSIYGPAKNIIKLLLELIEVILNVNVSTTAMCLLTLLIGIYL 809
Query: 101 DVIILEIY 78
+ ++ IY
Sbjct: 810 ILQVVFIY 817
>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +2
Query: 137 KYFPPPKNYDHIELPERQRLRVFDK---VPLYPSNLK 238
+YF PPKN +E+P + F + + +P LK
Sbjct: 61 QYFLPPKNRQPLEIPASYPIPTFKETFAILTFPQKLK 97
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.0 bits (52), Expect = 7.5
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -3
Query: 312 CFNCNVLCTVSGPRIY 265
CFNC+ LC S I+
Sbjct: 347 CFNCSALCLASSREIF 362
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/47 (23%), Positives = 22/47 (46%)
Frame = -3
Query: 399 MSNLLATTRRAISKCSYRILPPPVATTPYCFNCNVLCTVSGPRIYRR 259
+ N++ A+ KC RI P+ T+ + +C+ +G Y +
Sbjct: 179 VGNMVPNEMEALQKCIERIHARPIQTSVRIDTTHFICSSTGGPEYEK 225
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,640
Number of Sequences: 5004
Number of extensions: 51045
Number of successful extensions: 107
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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