Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_C14
(557 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0488 + 23397480-23397687,23397777-23397805,23398462-233985... 31 0.47
02_04_0485 + 23338980-23339187,23339277-23339305,23339962-233400... 31 0.47
02_04_0482 + 23291986-23292181,23292289-23292317,23293500-232936... 31 0.47
11_06_0584 - 25220371-25222917 29 1.9
05_05_0320 + 24085600-24086458,24087025-24087171,24087265-240873... 29 1.9
05_04_0274 - 19636163-19636280,19636359-19636423,19636485-196366... 29 1.9
06_01_0194 + 1503350-1503554,1504399-1504490,1504835-1504935,150... 28 5.8
02_05_1303 + 35572403-35572624,35572744-35572860,35572987-355731... 28 5.8
01_05_0454 + 22381302-22382642 28 5.8
12_01_0395 - 3117315-3118117,3118354-3118478,3118558-3118770,311... 27 7.7
05_06_0171 - 26127547-26127592,26127955-26128079,26128187-261283... 27 7.7
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986... 27 7.7
>02_04_0488 +
23397480-23397687,23397777-23397805,23398462-23398564,
23398811-23398982,23399380-23399440,23399757-23399889,
23400438-23400709,23400776-23400843,23401096-23401235,
23401413-23401499,23401580-23402088,23402173-23402990,
23403024-23403222,23403662-23403817
Length = 984
Score = 31.5 bits (68), Expect = 0.47
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -1
Query: 446 QAATVDQFSKWQTFSSCLISWLPLDAPFQNAHTASYHHQLQQHHIALTVMYC 291
+A VD+F +W+TF C + W+ A F+ + Q Q+ L + C
Sbjct: 349 RAMFVDKFLRWKTFPLCCLRWILHYAVFELPPNSGIETQKQRTSSFLAIGLC 400
>02_04_0485 +
23338980-23339187,23339277-23339305,23339962-23340064,
23340311-23340482,23340880-23340940,23341257-23341389,
23341938-23342208,23342595-23342734,23342912-23342998,
23343078-23343586,23343671-23344488,23344522-23344720,
23345552-23345696,23345728-23345782,23347652-23347778,
23347867-23347936,23348448-23348553,23348636-23348747,
23349243-23349365,23349468-23349627,23349751-23349827,
23349925-23349977,23350151-23350205,23350500-23351174
Length = 1495
Score = 31.5 bits (68), Expect = 0.47
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -1
Query: 446 QAATVDQFSKWQTFSSCLISWLPLDAPFQNAHTASYHHQLQQHHIALTVMYC 291
+A VD+F +W+TF C + W+ A F+ + Q Q+ L + C
Sbjct: 326 RAMFVDKFLRWKTFPLCCLRWILHYAVFELPPNSGIETQKQRTSSFLAIGLC 377
>02_04_0482 +
23291986-23292181,23292289-23292317,23293500-23293602,
23293855-23293979,23294788-23294920,23295468-23295739,
23295806-23295873,23296126-23296265,23296443-23296529,
23296610-23297118,23297203-23298020,23298054-23298252,
23299084-23299228,23299260-23299314,23301184-23301310,
23301399-23301468,23301980-23302085,23302168-23302279,
23302775-23302897,23303000-23303159,23303283-23303359,
23303457-23303509,23303683-23303737,23304032-23304706
Length = 1478
Score = 31.5 bits (68), Expect = 0.47
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -1
Query: 446 QAATVDQFSKWQTFSSCLISWLPLDAPFQNAHTASYHHQLQQHHIALTVMYC 291
+A VD+F +W+TF C + W+ A F+ + Q Q+ L + C
Sbjct: 309 RAMFVDKFLRWKTFPLCCLRWILHYAVFELPPNSGIETQKQRTSSFLAIGLC 360
>11_06_0584 - 25220371-25222917
Length = 848
Score = 29.5 bits (63), Expect = 1.9
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Frame = +2
Query: 233 LKPPKMQKRLRYMR------GPET------VHNTLQLKQYGVVATGGGRMRYEHFEMARL 376
L PPK+ K +R GPE V + L++ GVV G R ++ ++
Sbjct: 563 LMPPKISKNTEILRHIQIKDGPEAQLQLSHVASLDGLRKLGVVLDG----REDNIKLLLT 618
Query: 377 VVARRLDMKKMFAIWRIDPP 436
+ARR D + ++W +PP
Sbjct: 619 TIARRSDTLRSLSVWITEPP 638
>05_05_0320 +
24085600-24086458,24087025-24087171,24087265-24087395,
24087536-24087746,24087834-24088071,24088757-24088931
Length = 586
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 28 IDKFKL*KI*YVESNISYISRIITSRGYTINIYSRH*IFSSTEKL*SY 171
I F L K+ +E++++ SRI + GY Y+ H IFS+ + SY
Sbjct: 504 ISDFGLAKLFNMEASVANTSRIAGTYGYMAPEYALHGIFSAKSDVFSY 551
>05_04_0274 -
19636163-19636280,19636359-19636423,19636485-19636637,
19636738-19637043,19637137-19637314,19637452-19637687,
19637835-19638032,19638171-19638293,19638729-19639013,
19639186-19639326,19639799-19640188,19640465-19640647,
19640934-19641020
Length = 820
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = -1
Query: 431 DQFSKWQTFSSCL-ISWLPLDAPFQNAHTASYHHQLQQHHIALTVMYC-ALFQGHAYIED 258
D F+ +Q S + I+ +PLDA + T + + QQH YC Y+ D
Sbjct: 214 DPFAAYQVIHSGIPITMIPLDATNTISVTEEFVSEFQQHQQTYEAQYCFQSLDKSYYMWD 273
Query: 257 VFAFLVVLN 231
FA V L+
Sbjct: 274 SFAAGVALS 282
>06_01_0194 +
1503350-1503554,1504399-1504490,1504835-1504935,
1506186-1506276,1506616-1506674,1506764-1506884,
1506959-1507027,1507321-1507373,1507688-1507796,
1507895-1508065,1508148-1508306,1508561-1508650,
1508751-1508933,1509837-1510027,1510340-1510787
Length = 713
Score = 27.9 bits (59), Expect = 5.8
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 312 CFNCNVLCTVSGPRIYR 262
C++C++LC S P +YR
Sbjct: 142 CWSCDLLCAASSPDVYR 158
>02_05_1303 +
35572403-35572624,35572744-35572860,35572987-35573112,
35573217-35573279,35573837-35573944,35574587-35574664,
35574772-35574864,35575206-35575292,35575429-35575530,
35575617-35575736,35575839-35575901,35575974-35576119,
35576203-35576296,35576399-35576457,35576568-35576607,
35576694-35576785,35576877-35576946,35578172-35578333,
35578477-35578703,35578863-35579070,35579173-35579258,
35579450-35579541,35579674-35579870
Length = 883
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 32 INLNYKKFNMLSPTFRISLGLLRPEGTQLTFIAGIKYFPPPKNYDHIELP 181
+ L K MLS + +LG+ P+G ++ ++ + PP +Y +++P
Sbjct: 299 VKLREMKPGMLSRELKEALGM--PDGAPPPWLINMQRYGPPPSYPQLKIP 346
>01_05_0454 + 22381302-22382642
Length = 446
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 260 LRYMRGPETVHNTLQLKQYGVVATGGGRMRYEHFEMARLVV 382
+R + P VH+ L ++ GG +RY HF+ A V
Sbjct: 272 IRLIPVPRRVHDPSALNRFVGERRGGALLRYAHFDAAEFEV 312
>12_01_0395 -
3117315-3118117,3118354-3118478,3118558-3118770,
3118850-3120076,3120537-3120622,3121197-3121223
Length = 826
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 371 APFQNAHTASYHHQLQQHHIALTVMYCALFQGHAY 267
AP A+TAS H + HH+ + + + F H Y
Sbjct: 400 APNDVANTASQHVDAKDHHLQSRMAFASDFTKHQY 434
>05_06_0171 -
26127547-26127592,26127955-26128079,26128187-26128336,
26128738-26128827,26129012-26129251,26129735-26130394
Length = 436
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 220 LSFQFKTTKNAKTSSIYAWP*NSAQYITVKAI 315
LSF FK+ + + + ++ WP NS + +A+
Sbjct: 375 LSFSFKSKQGTRFTPMFQWPDNSLSFGVAQAL 406
>01_01_1220 +
9862195-9862281,9862427-9862646,9862764-9862916,
9863016-9863674,9863749-9863852,9863950-9864192,
9864262-9864376,9864696-9864909,9864995-9865511,
9866439-9866448,9867363-9867551,9867755-9868084,
9868639-9868872,9869303-9869743
Length = 1171
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -1
Query: 356 AHTASYHHQLQQHHIALTVMYCALFQGHAYIEDVF 252
A T SYHH Q LT A GH + VF
Sbjct: 77 ALTQSYHHAFQGFAAELTEAEAAALSGHERVVSVF 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,692,965
Number of Sequences: 37544
Number of extensions: 339212
Number of successful extensions: 801
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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