Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_C14
(557 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457117-1|CAG33398.1| 251|Homo sapiens MRPL16 protein. 125 1e-28
BC019269-1|AAH19269.1| 251|Homo sapiens mitochondrial ribosomal... 125 1e-28
BC001040-1|AAH01040.1| 251|Homo sapiens mitochondrial ribosomal... 125 1e-28
AK000491-1|BAA91202.1| 251|Homo sapiens protein ( Homo sapiens ... 125 1e-28
AF183428-1|AAG09697.1| 251|Homo sapiens 28.4 kDa protein protein. 125 1e-28
AB049642-1|BAB40847.1| 251|Homo sapiens mitochondrial ribosomal... 125 1e-28
BC038515-1|AAH38515.1| 796|Homo sapiens CCDC110 protein protein. 33 0.90
BC028419-1|AAH28419.1| 833|Homo sapiens coiled-coil domain cont... 33 0.90
AK097605-1|BAC05116.1| 596|Homo sapiens protein ( Homo sapiens ... 33 0.90
AB080722-1|BAC81776.1| 833|Homo sapiens hypothetical protein pr... 33 0.90
BC027450-1|AAH27450.1| 469|Homo sapiens SETD1A protein protein. 29 8.4
AB002337-1|BAA20797.2| 1709|Homo sapiens KIAA0339 protein protein. 29 8.4
>CR457117-1|CAG33398.1| 251|Homo sapiens MRPL16 protein.
Length = 251
Score = 125 bits (301), Expect = 1e-28
Identities = 55/143 (38%), Positives = 85/143 (59%)
Frame = +2
Query: 128 AGIKYFPPPKNYDHIELPERQRLRVFDKVPLYPSNLKPPKMQKRLRYMRGPETVHNTLQL 307
AG+K P +++ + +PE+ +LR ++ PL P + PK L +RGP T
Sbjct: 28 AGVKTLLPVPSFEDVSIPEKPKLRFIERAPLVPKVRREPK---NLSDIRGPSTEATEFTE 84
Query: 308 KQYGVVATGGGRMRYEHFEMARLVVARRLDMKKMFAIWRIDPPWQPVTXXXXXXXXXXXX 487
+ ++A GGG + + HFEM RL + R +D K MFAIWR+ P++P+T
Sbjct: 85 GNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGGGK 144
Query: 488 XAIDHYVTPIKSGRIILEVGGKC 556
AIDHYVTP+K+GR+++E+GG+C
Sbjct: 145 GAIDHYVTPVKAGRLVVEMGGRC 167
>BC019269-1|AAH19269.1| 251|Homo sapiens mitochondrial ribosomal
protein L16 protein.
Length = 251
Score = 125 bits (301), Expect = 1e-28
Identities = 55/143 (38%), Positives = 85/143 (59%)
Frame = +2
Query: 128 AGIKYFPPPKNYDHIELPERQRLRVFDKVPLYPSNLKPPKMQKRLRYMRGPETVHNTLQL 307
AG+K P +++ + +PE+ +LR ++ PL P + PK L +RGP T
Sbjct: 28 AGVKTLLPVPSFEDVSIPEKPKLRFIERAPLVPKVRREPK---NLSDIRGPSTEATEFTE 84
Query: 308 KQYGVVATGGGRMRYEHFEMARLVVARRLDMKKMFAIWRIDPPWQPVTXXXXXXXXXXXX 487
+ ++A GGG + + HFEM RL + R +D K MFAIWR+ P++P+T
Sbjct: 85 GNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGGGK 144
Query: 488 XAIDHYVTPIKSGRIILEVGGKC 556
AIDHYVTP+K+GR+++E+GG+C
Sbjct: 145 GAIDHYVTPVKAGRLVVEMGGRC 167
>BC001040-1|AAH01040.1| 251|Homo sapiens mitochondrial ribosomal
protein L16 protein.
Length = 251
Score = 125 bits (301), Expect = 1e-28
Identities = 55/143 (38%), Positives = 85/143 (59%)
Frame = +2
Query: 128 AGIKYFPPPKNYDHIELPERQRLRVFDKVPLYPSNLKPPKMQKRLRYMRGPETVHNTLQL 307
AG+K P +++ + +PE+ +LR ++ PL P + PK L +RGP T
Sbjct: 28 AGVKTLLPVPSFEDVSIPEKPKLRFIERAPLVPKVRREPK---NLSDIRGPSTEATEFTE 84
Query: 308 KQYGVVATGGGRMRYEHFEMARLVVARRLDMKKMFAIWRIDPPWQPVTXXXXXXXXXXXX 487
+ ++A GGG + + HFEM RL + R +D K MFAIWR+ P++P+T
Sbjct: 85 GNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGGGK 144
Query: 488 XAIDHYVTPIKSGRIILEVGGKC 556
AIDHYVTP+K+GR+++E+GG+C
Sbjct: 145 GAIDHYVTPVKAGRLVVEMGGRC 167
>AK000491-1|BAA91202.1| 251|Homo sapiens protein ( Homo sapiens
cDNA FLJ20484 fis, clone KAT07770. ).
Length = 251
Score = 125 bits (301), Expect = 1e-28
Identities = 55/143 (38%), Positives = 85/143 (59%)
Frame = +2
Query: 128 AGIKYFPPPKNYDHIELPERQRLRVFDKVPLYPSNLKPPKMQKRLRYMRGPETVHNTLQL 307
AG+K P +++ + +PE+ +LR ++ PL P + PK L +RGP T
Sbjct: 28 AGVKTLLPVPSFEDVSIPEKPKLRFIERAPLVPKVRREPK---NLSDIRGPSTEATEFTE 84
Query: 308 KQYGVVATGGGRMRYEHFEMARLVVARRLDMKKMFAIWRIDPPWQPVTXXXXXXXXXXXX 487
+ ++A GGG + + HFEM RL + R +D K MFAIWR+ P++P+T
Sbjct: 85 GNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGGGK 144
Query: 488 XAIDHYVTPIKSGRIILEVGGKC 556
AIDHYVTP+K+GR+++E+GG+C
Sbjct: 145 GAIDHYVTPVKAGRLVVEMGGRC 167
>AF183428-1|AAG09697.1| 251|Homo sapiens 28.4 kDa protein protein.
Length = 251
Score = 125 bits (301), Expect = 1e-28
Identities = 55/143 (38%), Positives = 85/143 (59%)
Frame = +2
Query: 128 AGIKYFPPPKNYDHIELPERQRLRVFDKVPLYPSNLKPPKMQKRLRYMRGPETVHNTLQL 307
AG+K P +++ + +PE+ +LR ++ PL P + PK L +RGP T
Sbjct: 28 AGVKTLLPVPSFEDVSIPEKPKLRFIERAPLVPKVRREPK---NLSDIRGPSTEATEFTE 84
Query: 308 KQYGVVATGGGRMRYEHFEMARLVVARRLDMKKMFAIWRIDPPWQPVTXXXXXXXXXXXX 487
+ ++A GGG + + HFEM RL + R +D K MFAIWR+ P++P+T
Sbjct: 85 GNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGGGK 144
Query: 488 XAIDHYVTPIKSGRIILEVGGKC 556
AIDHYVTP+K+GR+++E+GG+C
Sbjct: 145 GAIDHYVTPVKAGRLVVEMGGRC 167
>AB049642-1|BAB40847.1| 251|Homo sapiens mitochondrial ribosomal
protein L16 (L16mt) protein.
Length = 251
Score = 125 bits (301), Expect = 1e-28
Identities = 55/143 (38%), Positives = 85/143 (59%)
Frame = +2
Query: 128 AGIKYFPPPKNYDHIELPERQRLRVFDKVPLYPSNLKPPKMQKRLRYMRGPETVHNTLQL 307
AG+K P +++ + +PE+ +LR ++ PL P + PK L +RGP T
Sbjct: 28 AGVKTLLPVPSFEDVSIPEKPKLRFIERAPLVPKVRREPK---NLSDIRGPSTEATEFTE 84
Query: 308 KQYGVVATGGGRMRYEHFEMARLVVARRLDMKKMFAIWRIDPPWQPVTXXXXXXXXXXXX 487
+ ++A GGG + + HFEM RL + R +D K MFAIWR+ P++P+T
Sbjct: 85 GNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGGGK 144
Query: 488 XAIDHYVTPIKSGRIILEVGGKC 556
AIDHYVTP+K+GR+++E+GG+C
Sbjct: 145 GAIDHYVTPVKAGRLVVEMGGRC 167
>BC038515-1|AAH38515.1| 796|Homo sapiens CCDC110 protein protein.
Length = 796
Score = 32.7 bits (71), Expect = 0.90
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 174 NYLKDRDYVFLTRSHFILPI*NHQKCKNVFDICVALKQ 287
N + D V L +S +P H C+N+ DIC ++KQ
Sbjct: 173 NVMSQADTVILDKSKITVPFLKHGFCENLDDICHSIKQ 210
>BC028419-1|AAH28419.1| 833|Homo sapiens coiled-coil domain
containing 110 protein.
Length = 833
Score = 32.7 bits (71), Expect = 0.90
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 174 NYLKDRDYVFLTRSHFILPI*NHQKCKNVFDICVALKQ 287
N + D V L +S +P H C+N+ DIC ++KQ
Sbjct: 210 NVMSQADTVILDKSKITVPFLKHGFCENLDDICHSIKQ 247
>AK097605-1|BAC05116.1| 596|Homo sapiens protein ( Homo sapiens
cDNA FLJ40286 fis, clone TESTI2027840. ).
Length = 596
Score = 32.7 bits (71), Expect = 0.90
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 174 NYLKDRDYVFLTRSHFILPI*NHQKCKNVFDICVALKQ 287
N + D V L +S +P H C+N+ DIC ++KQ
Sbjct: 210 NVMSQADTVILDKSKITVPFLKHGFCENLDDICHSIKQ 247
>AB080722-1|BAC81776.1| 833|Homo sapiens hypothetical protein
protein.
Length = 833
Score = 32.7 bits (71), Expect = 0.90
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 174 NYLKDRDYVFLTRSHFILPI*NHQKCKNVFDICVALKQ 287
N + D V L +S +P H C+N+ DIC ++KQ
Sbjct: 210 NVMSQADTVILDKSKITVPFLKHGFCENLDDICHSIKQ 247
>BC027450-1|AAH27450.1| 469|Homo sapiens SETD1A protein protein.
Length = 469
Score = 29.5 bits (63), Expect = 8.4
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -1
Query: 290 ALFQGHAYIEDVFAFLVVLNWKDKVGPCQKHVISVFQVIQYDHSFSVEEN-I*CL 129
A F H + +A ++ + + K+ K I V + I YD+ F +E+N I CL
Sbjct: 404 ARFINHCCTPNCYAKVITIESQKKIVIYSKQPIGVDEEITYDYKFPLEDNKIPCL 458
>AB002337-1|BAA20797.2| 1709|Homo sapiens KIAA0339 protein protein.
Length = 1709
Score = 29.5 bits (63), Expect = 8.4
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -1
Query: 290 ALFQGHAYIEDVFAFLVVLNWKDKVGPCQKHVISVFQVIQYDHSFSVEEN-I*CL 129
A F H + +A ++ + + K+ K I V + I YD+ F +E+N I CL
Sbjct: 1644 ARFINHCCTPNCYAKVITIESQKKIVIYSKQPIGVDEEITYDYKFPLEDNKIPCL 1698
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,350,544
Number of Sequences: 237096
Number of extensions: 1862493
Number of successful extensions: 3312
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3304
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5590411794
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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