Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C14
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    27   0.17 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   1.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.1  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   3.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   8.4  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 215 PLYPSNLKPPKMQKRLRYMRGPETVHNTLQLKQYGV 322
           P+Y  +    K + RLR+  G  TV+  L+L QY +
Sbjct: 131 PIYIESFSYHKQKLRLRWGTGAVTVNPELKLLQYDI 166


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -1

Query: 407 FSSCLISWLPLDAPFQNAHTASYHHQLQQHHIA 309
           FS    +WLP++  +++ + A+   +   H++A
Sbjct: 436 FSQTNKTWLPVNENYKSLNLAAQKREYYSHYVA 468


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +3

Query: 420 GELIHRGSLSLKRAKVSVWVVARVLLITMLHLSNQAES 533
           GEL  R    +   K S+W  A  L I   H S   ES
Sbjct: 757 GELFGRSGYGIGLQKGSLWADAVTLAILDFHESGFMES 794


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/47 (21%), Positives = 22/47 (46%)
 Frame = +2

Query: 164 DHIELPERQRLRVFDKVPLYPSNLKPPKMQKRLRYMRGPETVHNTLQ 304
           ++IE  ER+    +      P +++    + + +  +G  T HN L+
Sbjct: 11  EYIERREREAEHGYASTMPMPDDMRTVTKRPKTKKSQGSRTTHNELE 57


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 398 CLISWLPLDAPFQ 360
           CLISW PL  P Q
Sbjct: 429 CLISWNPLMQPKQ 441


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 437 TVDQFSKWQTFSSCLISWLP 378
           +V   SK+Q  +S  ++WLP
Sbjct: 25  SVHILSKYQLITSTTLNWLP 44


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -1

Query: 350 TASYHHQLQQHH 315
           T   HH LQ HH
Sbjct: 137 TLQRHHHLQNHH 148


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 300 NVLCTVSGPR 271
           NV+C  SGPR
Sbjct: 711 NVMCRTSGPR 720


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/32 (28%), Positives = 12/32 (37%)
 Frame = -1

Query: 437 TVDQFSKWQTFSSCLISWLPLDAPFQNAHTAS 342
           T      W+  +S     LP+D  F   H  S
Sbjct: 9   TTTGLENWRVNNSNYTELLPIDMRFNEGHIVS 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,002
Number of Sequences: 438
Number of extensions: 4209
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)