Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_C13
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 326 1e-90
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 325 3e-90
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 325 4e-90
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb... 27 2.7
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 26 4.7
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 8.2
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 8.2
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 8.2
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 8.2
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 326 bits (802), Expect = 1e-90
Identities = 145/208 (69%), Positives = 173/208 (83%)
Frame = +2
Query: 89 RSXLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 268
+ LKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+
Sbjct: 6 KKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAIL 65
Query: 269 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 448
QRLIKVDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCK
Sbjct: 66 MQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCK 125
Query: 449 VRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDISTNKIMDFIKFDSGNLCMITG 628
V+RV G K VP+LVTHDGRT+RYPDPLI VND+++L++ TNKI FIKFD+ M+TG
Sbjct: 126 VKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTG 185
Query: 629 GRNLGRVGTIVSRERHPGSFDIVHRQDS 712
GRN+GRVGTIV RE H GSF+I+H +D+
Sbjct: 186 GRNMGRVGTIVHREHHLGSFEIIHVKDA 213
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 325 bits (799), Expect = 3e-90
Identities = 144/208 (69%), Positives = 173/208 (83%)
Frame = +2
Query: 89 RSXLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 268
+ LKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+
Sbjct: 6 KKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAIL 65
Query: 269 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 448
QRLIKVDGKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCK
Sbjct: 66 MQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCK 125
Query: 449 VRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDISTNKIMDFIKFDSGNLCMITG 628
V+RV G K VP+LVTHDGRT+RYPDPLI VND+++L++ TNKI FIKFD+ M+TG
Sbjct: 126 VKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTG 185
Query: 629 GRNLGRVGTIVSRERHPGSFDIVHRQDS 712
GRN+GRVGTIV RE H GSF+I+H +D+
Sbjct: 186 GRNMGRVGTIVHREHHLGSFEIIHVKDA 213
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 325 bits (798), Expect = 4e-90
Identities = 144/208 (69%), Positives = 173/208 (83%)
Frame = +2
Query: 89 RSXLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 268
+ LKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+
Sbjct: 6 KKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAIL 65
Query: 269 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 448
QRLI+VDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCK
Sbjct: 66 MQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCK 125
Query: 449 VRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDISTNKIMDFIKFDSGNLCMITG 628
V+RV G K VP+LVTHDGRT+RYPDPLI VND+++L++ TNKI FIKFD+ M+TG
Sbjct: 126 VKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTG 185
Query: 629 GRNLGRVGTIVSRERHPGSFDIVHRQDS 712
GRN+GRVGTIV RE H GSF+I+H +D+
Sbjct: 186 GRNMGRVGTIVHREHHLGSFEIIHVKDA 213
>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 482 PYLVTHDGRTLRYPDPLINVNDSVQLDISTNKIMDFIKFDSGNL 613
P++++ + P L N N S NKI+DF+K D NL
Sbjct: 115 PWILSRPNQVEAVPIKLSNKNGQ---SASKNKILDFLKSDKENL 155
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.7
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +2
Query: 536 NVNDSVQLDISTNKIMDF---IKFDSGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 697
NVND V ++ +I+ KF+ LC + G L R+G + E GS D+V
Sbjct: 296 NVNDLVLHYLNRFEILVIRVPSKFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.4 bits (53), Expect = 8.2
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -3
Query: 486 YGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGS 307
YGTLL L L + + + +LP ++ +F ++ T+ G + S
Sbjct: 578 YGTLLMHFEPTYALSRLVSFAPPEVTF--SLPELDFLTSVFNFPLALRNTATRILGIILS 635
Query: 306 VR--TFPSTLMRRCFTILSTS 250
+ T S ++ CFTI+STS
Sbjct: 636 TKDSTRISEVLSSCFTIISTS 656
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -3
Query: 468 PVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFS 349
P+ RRT L L+ + W F S + RN +FS
Sbjct: 423 PILKRRTPQELLLSGRDLTPWPQIRRFDSLLARNRGDIFS 462
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 25.4 bits (53), Expect = 8.2
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = -3
Query: 588 KSMILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSL 436
K LL+E+SS E+ T+ S YRS Y L TL L
Sbjct: 661 KIQSLLIELSSHEENLTISSEKIYRSFLSRISEHYNELRNVTTVLGTLDCL 711
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 335 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYL-VTHDGRT 511
+V S+EK N++F + Y+V + + + K+ ++ ++ K+VP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 512 LR 517
L+
Sbjct: 1778 LK 1779
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,697
Number of Sequences: 5004
Number of extensions: 58622
Number of successful extensions: 188
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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