Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C13
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   279   2e-75
AF164625-1|AAD47816.1|  944|Caenorhabditis elegans tandem-array-...    31   0.62 
AF022974-6|AAC48041.1|  944|Caenorhabditis elegans Tandem array ...    31   0.62 
Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr...    31   0.82 
Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr...    31   0.82 
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    29   2.5  
M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical pr...    29   3.3  
M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z81496-4|CAI79124.1|   77|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  279 bits (683), Expect = 2e-75
 Identities = 129/208 (62%), Positives = 158/208 (75%)
 Frame = +2

Query: 89  RSXLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 268
           +  LKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  KI+
Sbjct: 5   KKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKIL 64

Query: 269 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 448
            QR+++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +KLCK
Sbjct: 65  TQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCK 124

Query: 449 VRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQLDISTNKIMDFIKFDSGNLCMITG 628
           V+ V T  K VP L T DGRT+RYPDP + VND++  +IST KI D +KF+ GNL  +TG
Sbjct: 125 VKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTG 184

Query: 629 GRNLGRVGTIVSRERHPGSFDIVHRQDS 712
           GRN+GRVG I  RER PG+ DI+H +DS
Sbjct: 185 GRNVGRVGIIGHRERLPGASDIIHIKDS 212


>AF164625-1|AAD47816.1|  944|Caenorhabditis elegans
           tandem-array-modifier protein protein.
          Length = 944

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
 Frame = +1

Query: 406 PPYHT*RSQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQCERLGAAR--HLHQQD 579
           PP H    ++       R ++P    V G   +     P P H   + G  R  ++HQQ 
Sbjct: 423 PPQHMQAQRLWGGPQPQRMNQPMMAQVGGRPGQYIMGHPPPMHHQMQQGPPRMMYMHQQH 482

Query: 580 HGLHQVRLRQPLHDHRRQE 636
           H +HQV   Q    H+R +
Sbjct: 483 HPMHQVE-DQMQRQHQRMQ 500


>AF022974-6|AAC48041.1|  944|Caenorhabditis elegans Tandem array
           expression modifierprotein 1 protein.
          Length = 944

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
 Frame = +1

Query: 406 PPYHT*RSQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQCERLGAAR--HLHQQD 579
           PP H    ++       R ++P    V G   +     P P H   + G  R  ++HQQ 
Sbjct: 423 PPQHMQAQRLWGGPQPQRMNQPMMAQVGGRPGQYIMGHPPPMHHQMQQGPPRMMYMHQQH 482

Query: 580 HGLHQVRLRQPLHDHRRQE 636
           H +HQV   Q    H+R +
Sbjct: 483 HPMHQVE-DQMQRQHQRMQ 500


>Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -3

Query: 429 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 271
           A+S  +R +V+  F   I+ +   +FS + T +NP+G   S R  P TL R C
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214


>Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -3

Query: 429 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 271
           A+S  +R +V+  F   I+ +   +FS + T +NP+G   S R  P TL R C
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +2

Query: 392 GRFTIHRITPEEAKYKLCKVRRVATGPKSVP-----YLVTHDGRTLR-YP 523
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R ++ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical
           protein ZK370.3b protein.
          Length = 921

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -2

Query: 298 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 206
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical
           protein ZK370.3a protein.
          Length = 927

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -2

Query: 298 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 206
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical
           protein Y71A12B.6 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 387 TSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMR 277
           T+     N F FS  T S+NP GY+  V     TL +
Sbjct: 236 TASCNGTNEFTFSDPTLSLNPTGYIWGVDQPSGTLAK 272


>Z81496-4|CAI79124.1|   77|Caenorhabditis elegans Hypothetical
           protein F09C6.13 protein.
          Length = 77

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 593 KFDSGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHRQ 706
           K DSGN  + T  R++ R+   V  E H    D+ H Q
Sbjct: 12  KVDSGNTTINTTNRSINRIDNSVDYESHGLDTDLEHLQ 49


>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = +1

Query: 445 QGAARRDRPQERAVPGDARRAHAPVPGPAHQCERLGAARHLHQQDHGLHQVRLRQPLHDH 624
           +G   R  PQ    P   + A      P+ Q ++    +   +Q H  HQ RL+Q     
Sbjct: 191 RGCPARSAPQRVPAPPAQQYAPRAPEYPSAQQQQQQREQQQREQQHREHQARLQQHQQQQ 250

Query: 625 RRQE 636
           ++Q+
Sbjct: 251 QQQQ 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,284,170
Number of Sequences: 27780
Number of extensions: 348030
Number of successful extensions: 1203
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)