Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C12
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    27   1.3  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    25   4.1  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    25   4.1  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    24   9.4  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    24   9.4  

>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -1

Query: 313  ILSLCSLSFYPQNMFMLRAEHSRVLPLVLHEY*LILKLVPYDTIVSLNL*LITKL 149
            I  L  L+ Y Q+    R EHS  L L   +  ++++L  Y+T   +NL ++ K+
Sbjct: 1099 IKGLSKLTKYLQSK--CRREHSLRLDLAFSKKFILMQLTGYETCNKINLRMLQKI 1151


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 134 LIEVQLKQEELYRLFTSV 81
           L+E+Q+ QEELY+ F  V
Sbjct: 164 LLELQISQEELYQNFARV 181


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 134 LIEVQLKQEELYRLFTSV 81
           L+E+Q+ QEELY+ F  V
Sbjct: 164 LLELQISQEELYQNFARV 181


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 354 CDERHSSTNPLHELFFPSAAYLSTLKICLCYEQST 250
           C + H+  N    +      Y STL+  +CY++ST
Sbjct: 416 CWDIHTKRNDSIIVQLFQGMYKSTLECSICYQKST 450


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 71  HEKRKTENSFVVNTMIVTESEP 6
           H KR+ ++   + TM+V E+ P
Sbjct: 143 HRKRREDDKNAIMTMVVREASP 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,383,162
Number of Sequences: 5004
Number of extensions: 23021
Number of successful extensions: 51
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)