Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C12
         (385 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0827 + 28016157-28017575                                         27   5.1  
01_06_0943 + 33204112-33204136,33204703-33205743,33205786-332059...    27   6.7  
06_02_0066 - 11081446-11081544,11081639-11081846,11083122-110832...    26   8.9  
04_03_0465 - 16227552-16227842,16227993-16228217,16228342-162284...    26   8.9  
03_01_0038 - 340564-341108,341214-341463,341546-341649,341728-34...    26   8.9  

>03_05_0827 + 28016157-28017575
          Length = 472

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 351 DERHSSTNPLHELFFPSAAY 292
           D+ HSS +PLH + FP  A+
Sbjct: 2   DDAHSSQSPLHVVIFPWLAF 21


>01_06_0943 +
           33204112-33204136,33204703-33205743,33205786-33205926,
           33206205-33206245,33208250-33208346,33208599-33208836,
           33208937-33209087,33209155-33209454
          Length = 677

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 147 GNLVINYKFKETIVSYGTNFKIS*YSCSTSGNTRLCSARN 266
           GNLVI +  +  IV+YG   K    +   SGN  L S  N
Sbjct: 86  GNLVIAHGGRSLIVAYGQGTKDMKATILDSGNLALSSMAN 125


>06_02_0066 -
           11081446-11081544,11081639-11081846,11083122-11083257,
           11083339-11083541,11083616-11083765,11083848-11083964,
           11084623-11085119
          Length = 469

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 318 ELFFPSAAYLSTLKIC 271
           E F+P+  YLST KIC
Sbjct: 15  EQFYPAMVYLSTSKIC 30


>04_03_0465 -
           16227552-16227842,16227993-16228217,16228342-16228477,
           16229756-16229974,16230269-16230569,16231865-16232108
          Length = 471

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 362 SESATRDTLVLTHCMNYSFPLQLIFLPSKYVYVTSRAQSSVATRTTRVLTNFKIG 198
           +E +  D + LT  M+   PL  +       YVT      VA+RTT ++ + KIG
Sbjct: 312 AEPSFGDQITLT-AMSSVIPLLCVSGTVGMGYVTMETFEWVASRTTAIVASAKIG 365


>03_01_0038 -
           340564-341108,341214-341463,341546-341649,341728-343255,
           343995-344056,344578-344728
          Length = 879

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -3

Query: 113 QEELYRLFTSVPLPH--EKRKTENSFVVNTMIVTESEPR 3
           ++EL+      P PH  EK  T+N+   N  +VT+ EPR
Sbjct: 249 EKELFLKTLQKPSPHTLEKENTQNN--QNRQVVTKLEPR 285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,607,083
Number of Sequences: 37544
Number of extensions: 136118
Number of successful extensions: 284
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)