Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C12
         (385 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88178-3|AAC24414.1|  305|Caenorhabditis elegans Yeast glc seven...    27   4.5  
U40802-9|AAK67244.2|  308|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AF022973-2|AAC25800.2|  527|Caenorhabditis elegans Hypothetical ...    26   7.9  
AF022973-1|AAT81194.1|  513|Caenorhabditis elegans Hypothetical ...    26   7.9  

>U88178-3|AAC24414.1|  305|Caenorhabditis elegans Yeast glc
           seven-like phosphatasesprotein 3 protein.
          Length = 305

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 310 LSLCSLSFYPQNMFMLRAEH 251
           L LC    YP+N FMLR  H
Sbjct: 104 LMLCFKIKYPENFFMLRGNH 123


>U40802-9|AAK67244.2|  308|Caenorhabditis elegans Hypothetical
           protein ZC477.10 protein.
          Length = 308

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 18/74 (24%), Positives = 38/74 (51%)
 Frame = -3

Query: 308 FPLQLIFLPSKYVYVTSRAQSSVATRTTRVLTNFKIGSI*HNCFFKFIINY*IATI*LLI 129
           F L+++F  S+YV +  + ++S +      L +   G I  + + KF+  + +  +  L+
Sbjct: 100 FGLKVLF-SSRYVLLRGQQEASPSPVFLNQLRDRFPGGIGDDIYAKFVTAFSLLPVAALV 158

Query: 128 EVQLKQEELYRLFT 87
           +VQL  +  Y L +
Sbjct: 159 DVQLNLKNSYLLLS 172


>AF022973-2|AAC25800.2|  527|Caenorhabditis elegans Hypothetical
           protein F25G6.7a protein.
          Length = 527

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 357 ICDERHSSTNPLHELFFPSAAYLSTLKICLCY 262
           I D   S   PL   +FPS  +++++ +C C+
Sbjct: 33  ISDGIPSQQRPLTYRWFPSWRFMTSIMLCFCF 64


>AF022973-1|AAT81194.1|  513|Caenorhabditis elegans Hypothetical
           protein F25G6.7b protein.
          Length = 513

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 357 ICDERHSSTNPLHELFFPSAAYLSTLKICLCY 262
           I D   S   PL   +FPS  +++++ +C C+
Sbjct: 19  ISDGIPSQQRPLTYRWFPSWRFMTSIMLCFCF 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,750,151
Number of Sequences: 27780
Number of extensions: 132206
Number of successful extensions: 303
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)