Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_C11
(534 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 219 3e-58
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 193 2e-50
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 95 4e-21
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 34 0.015
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.25
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 29 0.33
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 28 0.76
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.0
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 1.3
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 27 1.8
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 27 2.3
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 26 4.1
SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb... 25 5.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 5.4
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 5.4
SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.4
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 25 9.4
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 25 9.4
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 9.4
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 9.4
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 219 bits (534), Expect = 3e-58
Identities = 108/142 (76%), Positives = 124/142 (87%)
Frame = +3
Query: 108 PIYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAI 287
P+Y PFFGVMG +AI+F+S GAAYGTAK+G GI+AM V+RP+ I+K+ IPVVMAGIIAI
Sbjct: 7 PVYAPFFGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAI 66
Query: 288 YGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQ 467
YGLVV+VLI+G+L Q +LY GFI LGAGL+VG +GLAAGFAIGIVGDAGVRGTAQQ
Sbjct: 67 YGLVVSVLISGNLKQ---ILSLYSGFIQLGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQ 123
Query: 468 PRLFVGMILILIFAEVLGLYGL 533
PRLFV MILILIFAEVLGLYGL
Sbjct: 124 PRLFVAMILILIFAEVLGLYGL 145
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 193 bits (470), Expect = 2e-50
Identities = 90/142 (63%), Positives = 114/142 (80%)
Frame = +3
Query: 108 PIYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAI 287
PIY FFG G ++++FS LGA YGTA +G GIAA+ RPE +MKS+IPVVM+GII +
Sbjct: 7 PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGV 66
Query: 288 YGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQ 467
YGLV++VLIAG + P N+Y+L+ GFIHL AGLAVG +G+AAG+AIG+VGD GV+ +Q
Sbjct: 67 YGLVMSVLIAGDMS-PDNDYSLFSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFMRQ 125
Query: 468 PRLFVGMILILIFAEVLGLYGL 533
R+FV M+LILIFAEVLGLYGL
Sbjct: 126 DRIFVSMVLILIFAEVLGLYGL 147
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 95.5 bits (227), Expect = 4e-21
Identities = 49/141 (34%), Positives = 77/141 (54%), Gaps = 5/141 (3%)
Frame = +3
Query: 126 FGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLVVA 305
+G++G AS + F +GAA+G GT I AV P K++I ++ ++AIY L++A
Sbjct: 45 WGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIA 104
Query: 306 VLIAGSLD--QPSNNYT---LYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 470
++ + ++ P+ YT Y GF G+ VG L G +GI G + AQ
Sbjct: 105 IVFSAKINDINPAGFYTKSHYYTGFALFWGGITVGLCNLICGVCVGITGSSAALADAQDA 164
Query: 471 RLFVGMILILIFAEVLGLYGL 533
LFV ++++ IF VLGL+GL
Sbjct: 165 SLFVKVLVVEIFGSVLGLFGL 185
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.9 bits (74), Expect = 0.015
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = -3
Query: 529 PYRPNTSAKMRIRIIPTNNLGCWAVPRTPASPTMPMAKPAARPEKPTARPAPK*MNP 359
P RP ++A ++ PT +VP P++P MP P+A P A AP NP
Sbjct: 1691 PVRPQSAAPPQMSA-PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 29.9 bits (64), Expect = 0.25
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -3
Query: 532 SPYRPNTSAKMRIRIIPTNNLGCWAVPRTPASPTMPMAKPAARPEKPTAR 383
S Y+P++S+K+ + + G A+P+ P P P +P R T +
Sbjct: 401 SSYKPSSSSKVSAKSVSRKPTGAPAIPKLP--PKHPSRQPTVRATPSTGK 448
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 29.5 bits (63), Expect = 0.33
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = +3
Query: 252 IIPVVMAGIIAIYGLVVAVLIAGSLDQPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGI 431
II +AG+IA + +++ IAG + G ++ G L LA GF I
Sbjct: 193 IITATIAGVIAAFSVIITATIAGVI-------AAMVGILYFGHWLVYKILILAFGFKIVT 245
Query: 432 VGDAGVRGT 458
GD V T
Sbjct: 246 SGDVCVSNT 254
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 28.3 bits (60), Expect = 0.76
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 111 LDFRPFFLNVGVFTGPKNSDDYLHTL 34
+DF P V TGP N+DDY+H +
Sbjct: 357 MDF-PNITQVVQITGPSNTDDYIHRI 381
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.0
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -3
Query: 460 AVPRTPAS--PTMPMAKPAARPEKPTARPAP 374
A P P S P++PM PAA P P+A AP
Sbjct: 427 APPSLPPSAPPSLPMGAPAAPPLPPSAPIAP 457
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +3
Query: 123 FFG-VMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMR-PEQIMKSIIPVVMAGIIAIYGL 296
F+G ++G + F+ + + ++ G + I+ S+ P+V++ IIA +
Sbjct: 1439 FYGEILGPLGTLFFTCIPFLFINSQPGNDDETQSTNAFIRLIIMSVAPLVLSAIIAFFFF 1498
Query: 297 VVAVLIAGSLDQPSNNYTLY 356
+ +++ L S Y +Y
Sbjct: 1499 CLGIMLRPILGDRSKTYGVY 1518
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 27.1 bits (57), Expect = 1.8
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +3
Query: 111 IYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIY 290
+YGPF+ A+ FS+ Y +G G + ++ K +I A II Y
Sbjct: 87 LYGPFWITTTVIQALFFSNSITEYARYATGHGTSGYSI-------KKLISA--ASIIYGY 137
Query: 291 GLVVAVLIAGSL 326
++AVL+ G L
Sbjct: 138 TTIIAVLLWGIL 149
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 26.6 bits (56), Expect = 2.3
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +3
Query: 294 LVVAVLIAGSLDQPSNNYTLYK--GFIHLGAGLAVGFSGLAAGFAIGIVGD-AGVRGTAQ 464
L+ + ++ + +N +Y+ G + +A+G +GLA G IG+ G A A
Sbjct: 141 LITSSMLLDTFQTMESNQEMYELSGTRKMRRRIAMGLAGLAGGALIGLTGGLAAPFVAAG 200
Query: 465 QPRLFVGMIL-ILIFAEVLG 521
LF G+ L +I A LG
Sbjct: 201 LGTLFAGLGLGTMIGATYLG 220
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 19 VVSWSECVQIVIRVFGTCKYSHIQEKWPK 105
V S V I + F + SH+QEKW K
Sbjct: 96 VFSLIAVVLITVMGFAMLRVSHLQEKWRK 124
>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 82 HIQEKWPKIQSMDLSLELWGRRLPSSSAPLVLHMAQPSQAPVLPP 216
HI WP+ QS D E G L + A + + + ++ +L P
Sbjct: 62 HIATLWPETQSSDQENEEEGEELEDAVAKEINSLQKKNKKELLTP 106
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 5.4
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Frame = -3
Query: 532 SPYRPNTSAKMRIRIIPTNNLGCWAVPRT----------PASPTMPMAKPAARPEKPTAR 383
S RP TSA R I P + +P PA P P+ P + P P+A
Sbjct: 135 SELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAV 194
Query: 382 P 380
P
Sbjct: 195 P 195
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = -3
Query: 460 AVPRTPASPTMPMA----KPAARPEKPTARPAPK 371
+VP+ PA+P +P A +P A P P AP+
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQ 546
>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 104
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 74 NTPTFKKNGRKSNLWTFLWSYGGGVCHHLQLPWCCIWHSQVR 199
++PT + + W S+G VC H++ CC ++S+++
Sbjct: 32 DSPTTVHHDERKESWR---SHGFIVCLHIRCCICCKYNSKIK 70
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -3
Query: 253 MDFMICSGRITAMAAIPVPDLAVPYAAPREL 161
++ ++ +G ++ +P+ DLA Y A R++
Sbjct: 283 LEAIVATGAKVVLSKLPIGDLATQYFADRDI 313
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 478 NNLGCWAVPRTPASPTMPMAKPAARPEKPTAR 383
+N+ V P +P M M PA P K AR
Sbjct: 256 SNMHIRYVSANPKTPVMYMVDPAYEPHKQIAR 287
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 24.6 bits (51), Expect = 9.4
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -1
Query: 234 QAASPPWRQYRCLTWL 187
Q ++PPW C +WL
Sbjct: 448 QGSAPPWHYIPCQSWL 463
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 50 SSEFLGPVNTPTFKKNG 100
SS +L P +P FKKNG
Sbjct: 169 SSGYLHPKTSPIFKKNG 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,183
Number of Sequences: 5004
Number of extensions: 58594
Number of successful extensions: 184
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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