Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_C10
(430 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 262 6e-71
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 262 6e-71
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 85 2e-17
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 85 2e-17
Z81493-4|CAB04041.1| 165|Caenorhabditis elegans Hypothetical pr... 30 0.61
Z99281-9|CAB16515.1| 242|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z29094-6|CAD45581.1| 457|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z29094-5|CAA82336.1| 465|Caenorhabditis elegans Hypothetical pr... 29 1.9
U50135-5|AAN63430.2| 346|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z93377-3|CAB07580.1| 358|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z70783-1|CAA94852.2| 765|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z49912-1|CAA90140.1| 588|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z11126-9|CAA77475.2| 246|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z11115-21|CAA77461.2| 246|Caenorhabditis elegans Hypothetical p... 27 5.7
Z11115-19|CAA77457.2| 246|Caenorhabditis elegans Hypothetical p... 27 5.7
Z92807-1|CAB07264.1| 747|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z82060-7|CAB04884.1| 454|Caenorhabditis elegans Hypothetical pr... 27 7.5
AB039949-1|BAC06512.1| 747|Caenorhabditis elegans kinesin protein. 27 7.5
AF100306-1|AAC68921.1| 423|Caenorhabditis elegans Hypothetical ... 26 10.0
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 262 bits (643), Expect = 6e-71
Identities = 120/143 (83%), Positives = 131/143 (91%)
Frame = +1
Query: 1 ARGYRMEMLYEGPHDDEAALGIKTCDPEAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVVT 180
A+ YRMEMLYEGPHDDEAA+ IKTCDP PLMMY+SKMVPTSDKGRFYAFGRVFSGKV T
Sbjct: 358 AQKYRMEMLYEGPHDDEAAVAIKTCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGKVAT 417
Query: 181 GQKARIMGPNFQPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTG 360
G KARI GPN+ PGKKEDLYEKTIQRTILMMGR++E IED+PSGNI GLVGVDQ+LVK G
Sbjct: 418 GMKARIQGPNYVPGKKEDLYEKTIQRTILMMGRFIEPIEDIPSGNIAGLVGVDQYLVKGG 477
Query: 361 TITTFKNAHNMKVMKFSVSTVVR 429
TITT+K+AHNM+VMKFSVS VVR
Sbjct: 478 TITTYKDAHNMRVMKFSVSPVVR 500
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 262 bits (643), Expect = 6e-71
Identities = 120/143 (83%), Positives = 131/143 (91%)
Frame = +1
Query: 1 ARGYRMEMLYEGPHDDEAALGIKTCDPEAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVVT 180
A+ YRMEMLYEGPHDDEAA+ IKTCDP PLMMY+SKMVPTSDKGRFYAFGRVFSGKV T
Sbjct: 358 AQKYRMEMLYEGPHDDEAAVAIKTCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGKVAT 417
Query: 181 GQKARIMGPNFQPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTG 360
G KARI GPN+ PGKKEDLYEKTIQRTILMMGR++E IED+PSGNI GLVGVDQ+LVK G
Sbjct: 418 GMKARIQGPNYVPGKKEDLYEKTIQRTILMMGRFIEPIEDIPSGNIAGLVGVDQYLVKGG 477
Query: 361 TITTFKNAHNMKVMKFSVSTVVR 429
TITT+K+AHNM+VMKFSVS VVR
Sbjct: 478 TITTYKDAHNMRVMKFSVSPVVR 500
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 85.4 bits (202), Expect = 2e-17
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 3/142 (2%)
Frame = +1
Query: 13 RMEMLYEGPHDDEAALGIKTCDPEAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKA 192
++E Y GP D + A ++ C+ E PLM++ +K P D +F+ FGRV SG +
Sbjct: 452 KIEQTYLGPADSQLAQEMQKCNAEGPLMVHTTKNYPVDDATQFHVFGRVMSGTLEANTDV 511
Query: 193 RIMGPNFQPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 372
R++G N+ +ED T+ R + + Y + VP+G + G+DQ +VKT TI
Sbjct: 512 RVLGENYSIQDEEDCRRMTVGRLFVRVASYQIEVSRVPAGCWVLIEGIDQPIVKTATIAE 571
Query: 373 F---KNAHNMKVMKFSVSTVVR 429
++ + + +KF+ + V+
Sbjct: 572 LGYEEDVYIFRPLKFNTRSCVK 593
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 85.4 bits (202), Expect = 2e-17
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 3/142 (2%)
Frame = +1
Query: 13 RMEMLYEGPHDDEAALGIKTCDPEAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKA 192
++E Y GP D + A ++ C+ E PLM++ +K P D +F+ FGRV SG +
Sbjct: 327 KIEQTYLGPADSQLAQEMQKCNAEGPLMVHTTKNYPVDDATQFHVFGRVMSGTLEANTDV 386
Query: 193 RIMGPNFQPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 372
R++G N+ +ED T+ R + + Y + VP+G + G+DQ +VKT TI
Sbjct: 387 RVLGENYSIQDEEDCRRMTVGRLFVRVASYQIEVSRVPAGCWVLIEGIDQPIVKTATIAE 446
Query: 373 F---KNAHNMKVMKFSVSTVVR 429
++ + + +KF+ + V+
Sbjct: 447 LGYEEDVYIFRPLKFNTRSCVK 468
>Z81493-4|CAB04041.1| 165|Caenorhabditis elegans Hypothetical
protein F01D5.5 protein.
Length = 165
Score = 30.3 bits (65), Expect = 0.61
Identities = 23/79 (29%), Positives = 33/79 (41%)
Frame = -3
Query: 410 LNFITFMLCAFLKVVMVPVLTRN*STPTRPQMLPEGTSSMAST*RPIMRMVRWMVFSYKS 231
L F+T A + V L N +T T + +S+ S+ P S K+
Sbjct: 7 LIFVTLFALALCQEDYVEELAENTTTTTEGSTVSSDSSTAGSSEAPCQDDPSTDCASLKN 66
Query: 230 SFLPGWKLGPMIRAFCPVT 174
K PM++AFCPVT
Sbjct: 67 -LCTNSKYTPMLKAFCPVT 84
>Z99281-9|CAB16515.1| 242|Caenorhabditis elegans Hypothetical
protein Y57G11C.14 protein.
Length = 242
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -2
Query: 369 SDGTSLDEELIDADQTA-NVTGGHILNGLHVTAHHEDGTLDGLLIQIFFLAGLEVGAHDT 193
S+ T++ E + A N +GG ++ H +++DGT+ L ++I+ LE G+ D
Sbjct: 145 SEATTISELTTSTFKKAKNPSGGALVLDNHYLINNDDGTVSKLPMKIYVKQHLEDGSLDV 204
Query: 192 GLL 184
L+
Sbjct: 205 QLV 207
>Z29094-6|CAD45581.1| 457|Caenorhabditis elegans Hypothetical
protein C07A9.7b protein.
Length = 457
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 205 PNFQPGKK-EDLYEKTIQRTILMMGRYVEAIEDVPSGN-ICGLVGV 336
P+F+ + L +K + GR+VEAIED+P G +C G+
Sbjct: 5 PSFRSNEHFPQLCDKVTVKWDKKRGRFVEAIEDIPIGTVVCVETGI 50
>Z29094-5|CAA82336.1| 465|Caenorhabditis elegans Hypothetical
protein C07A9.7a protein.
Length = 465
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 205 PNFQPGKK-EDLYEKTIQRTILMMGRYVEAIEDVPSGN-ICGLVGV 336
P+F+ + L +K + GR+VEAIED+P G +C G+
Sbjct: 5 PSFRSNEHFPQLCDKVTVKWDKKRGRFVEAIEDIPIGTVVCVETGI 50
>U50135-5|AAN63430.2| 346|Caenorhabditis elegans Hypothetical
protein C52E12.6 protein.
Length = 346
Score = 27.5 bits (58), Expect = 4.3
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 113 WYRHRTRAVSTRSGACSPVKSLPDRRPVSWAPTSSPARKKICMRRPSSVP 262
W+R R S R C + L R P+S +P SS R+KI + ++P
Sbjct: 283 WFRTRG---SERKAKCD--EDLVKREPISDSPPSSAKRRKIYVPEFEAIP 327
>Z93377-3|CAB07580.1| 358|Caenorhabditis elegans Hypothetical
protein F13A7.7 protein.
Length = 358
Score = 27.1 bits (57), Expect = 5.7
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -3
Query: 215 WKLGPMIRAFCPVTTLPENT--RPNA*KRPLSDVGTILLTYIMRG 87
WK GP+ A PV PEN+ R +P D GT L+ Y G
Sbjct: 290 WKQGPVRMAKLPVFPEPENSVKRDMTSPKPNDDDGT-LMGYFRHG 333
>Z70783-1|CAA94852.2| 765|Caenorhabditis elegans Hypothetical
protein ZK856.1 protein.
Length = 765
Score = 27.1 bits (57), Expect = 5.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 162 EHAPERVETALVRCRYHFAHVHHERCFGITSLDTEGSLII 43
+ P ++ L RC + H ++R I SL T+GSL+I
Sbjct: 43 DDGPLKIRDILTRCINDYVHEANKR---IRSLQTDGSLLI 79
>Z49912-1|CAA90140.1| 588|Caenorhabditis elegans Hypothetical
protein T24F1.2 protein.
Length = 588
Score = 27.1 bits (57), Expect = 5.7
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 152 GACSPVKSLPDRRPVSWAPTSSPARKKICMRRPSSVPSS*WAVTWRPLRMC 304
GAC+ ++ +S A T P RKK+ +RP+ + SS ++V P+ C
Sbjct: 315 GACASFSTI-----LSMAVTLLP-RKKLHKKRPNKIVSSAFSVASTPISQC 359
>Z11126-9|CAA77475.2| 246|Caenorhabditis elegans Hypothetical
protein ZK637.12 protein.
Length = 246
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -2
Query: 318 NVTGGHILNGLHVTAHHEDGTLDGLLIQIFFLAGLEVGAHDTGLL 184
N +GG ++ H +++DGT+ L ++++ LE G+ D L+
Sbjct: 167 NSSGGALVLDNHYLINNDDGTVKKLPMKVYVKQRLEDGSLDVQLV 211
>Z11115-21|CAA77461.2| 246|Caenorhabditis elegans Hypothetical
protein ZK637.12 protein.
Length = 246
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -2
Query: 318 NVTGGHILNGLHVTAHHEDGTLDGLLIQIFFLAGLEVGAHDTGLL 184
N +GG ++ H +++DGT+ L ++++ LE G+ D L+
Sbjct: 167 NSSGGALVLDNHYLINNDDGTVKKLPMKVYVKQRLEDGSLDVQLV 211
>Z11115-19|CAA77457.2| 246|Caenorhabditis elegans Hypothetical
protein ZK637.15 protein.
Length = 246
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -2
Query: 318 NVTGGHILNGLHVTAHHEDGTLDGLLIQIFFLAGLEVGAHDTGLL 184
N +GG ++ H +++DGT+ L ++++ LE G+ D L+
Sbjct: 167 NSSGGALVLDNHYLINNDDGTVKKLPMKVYVKQRLEDGSLDVQLV 211
>Z92807-1|CAB07264.1| 747|Caenorhabditis elegans Hypothetical
protein K11D9.1a protein.
Length = 747
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 318 NVTGGHILNGLHVTAHHEDGTLDGLLI 238
NVTG ++ G+HV DG + G +I
Sbjct: 54 NVTGKMLVVGMHVEIKRSDGRIHGAVI 80
>Z82060-7|CAB04884.1| 454|Caenorhabditis elegans Hypothetical
protein T27F6.5a protein.
Length = 454
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 354 LDEELIDADQTANVTGGHILNGLHVTAHHED 262
LDE++I + + V GGHI + H+ + E+
Sbjct: 192 LDEDVIKVEADSGVHGGHISHEYHLKSSLEE 222
>AB039949-1|BAC06512.1| 747|Caenorhabditis elegans kinesin protein.
Length = 747
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 318 NVTGGHILNGLHVTAHHEDGTLDGLLI 238
NVTG ++ G+HV DG + G +I
Sbjct: 54 NVTGKMLVVGMHVEIKRSDGRIHGAVI 80
>AF100306-1|AAC68921.1| 423|Caenorhabditis elegans Hypothetical
protein T24C4.2 protein.
Length = 423
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 138 TALVRCRYHFAHVHHERCFGITSLDTEGS 52
TA++R + F HE+C +TSL+T S
Sbjct: 132 TAMIRLNFQF----HEQCLRLTSLETRHS 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,684,454
Number of Sequences: 27780
Number of extensions: 234113
Number of successful extensions: 704
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -