Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C10
         (430 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   2.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.7  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/17 (52%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
 Frame = -1

Query: 64  YRGQ-PHHHEGLHTTSP 17
           +RG  PHH  G HT  P
Sbjct: 329 HRGSSPHHQHGNHTMGP 345


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 49  HHHEGLHTTSPY 14
           HHH+ L+  SPY
Sbjct: 77  HHHQVLYQQSPY 88


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 328 VGVDQFLVKTGTITTFKNAHNMKVMKFSV 414
           V  +QFL    T++  +  HN +V K S+
Sbjct: 558 VSNEQFLNTAATLSFCEMIHNAQVNKRSI 586


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,219
Number of Sequences: 438
Number of extensions: 3018
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)