Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_C08
(538 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 86 3e-18
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 76 3e-15
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 64 1e-11
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 60 2e-10
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 58 6e-10
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 57 2e-09
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 56 3e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 55 8e-09
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 54 1e-08
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 52 7e-08
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 46 5e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 44 1e-05
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 44 2e-05
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 43 3e-05
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 42 6e-05
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 42 8e-05
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 42 8e-05
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 39 5e-04
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 36 0.005
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 35 0.007
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 34 0.012
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 31 0.083
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 28 1.0
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 27 1.8
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 26 4.1
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 26 4.1
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 25 5.4
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 25 5.4
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|... 25 9.5
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 9.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 86.2 bits (204), Expect = 3e-18
Identities = 41/84 (48%), Positives = 62/84 (73%)
Frame = +3
Query: 18 EKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERD 197
+K +L ++E+ +++D K +IF TKR A++ITR +R+ GWPA+ +HGDK Q ERD
Sbjct: 352 DKRARLGKDIEEVLKDRDN--KVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERD 409
Query: 198 EVLYQFKEGRSSILVATDVAARGL 269
VL +F+ G+S I+VATDVA+RG+
Sbjct: 410 WVLNEFRTGKSPIMVATDVASRGI 433
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 76.2 bits (179), Expect = 3e-15
Identities = 37/85 (43%), Positives = 55/85 (64%)
Frame = +3
Query: 15 HEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQER 194
H ++++ L +I P T+IFVETKR A+ +T + +PA +HGD+TQ+ER
Sbjct: 410 HVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRER 469
Query: 195 DEVLYQFKEGRSSILVATDVAARGL 269
+ L F+ GR+SI+VAT VA+RGL
Sbjct: 470 ERALELFRSGRTSIMVATAVASRGL 494
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 64.1 bits (149), Expect = 1e-11
Identities = 29/75 (38%), Positives = 45/75 (60%)
Frame = +3
Query: 45 LQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEG 224
++EI ++ IIFV KR E I + + GW AV +HG K+Q++R+ + Q +
Sbjct: 506 VEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNK 565
Query: 225 RSSILVATDVAARGL 269
+ ILVATD+A RG+
Sbjct: 566 TADILVATDIAGRGI 580
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 60.1 bits (139), Expect = 2e-10
Identities = 30/88 (34%), Positives = 51/88 (57%)
Frame = +3
Query: 6 RQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQ 185
R E K ++L LL E+ NQ +T++FV+ + A+ + ++ + G+ + +HG K Q
Sbjct: 646 RPEESKFSRLLELLGELYNNQ-LDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQ 704
Query: 186 QERDEVLYQFKEGRSSILVATDVAARGL 269
+RD + +K G +L+AT V ARGL
Sbjct: 705 HDRDSTISDYKAGVFDVLIATSVVARGL 732
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 58.4 bits (135), Expect = 6e-10
Identities = 22/63 (34%), Positives = 40/63 (63%)
Frame = +3
Query: 81 KTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAA 260
+ +IF ++RK + +T +R + MHG+ Q+ERD ++ F++G S +L+ TD+ A
Sbjct: 262 QAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWA 321
Query: 261 RGL 269
RG+
Sbjct: 322 RGI 324
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 56.8 bits (131), Expect = 2e-09
Identities = 31/87 (35%), Positives = 48/87 (55%)
Frame = +3
Query: 9 QEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQ 188
+E K K+N LL + NQ +IFV++ +A + R +R +P++C+HG Q+
Sbjct: 278 EEKAKNRKINDLLDSLEFNQ-----VVIFVKSVSRANELDRLLRECNFPSICIHGGLPQE 332
Query: 189 ERDEVLYQFKEGRSSILVATDVAARGL 269
ER + FK+ I VATDV RG+
Sbjct: 333 ERIKRYKAFKDFDKRICVATDVFGRGI 359
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 56.4 bits (130), Expect = 3e-09
Identities = 23/63 (36%), Positives = 39/63 (61%)
Frame = +3
Query: 81 KTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAA 260
+ +IF T+RK + +T + + MHGD Q +RD ++++F+ G S IL+ TD+ A
Sbjct: 260 QAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLA 319
Query: 261 RGL 269
RG+
Sbjct: 320 RGI 322
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 54.8 bits (126), Expect = 8e-09
Identities = 33/83 (39%), Positives = 48/83 (57%)
Frame = +3
Query: 21 KENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDE 200
KE L+ LL++ + K +IFV K++A + + R + V +HGD +Q R +
Sbjct: 399 KERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLARK-YNVVGIHGDMSQGARLQ 457
Query: 201 VLYQFKEGRSSILVATDVAARGL 269
L FK G+ +LVATDVAARGL
Sbjct: 458 ALNDFKSGKCPVLVATDVAARGL 480
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 54.4 bits (125), Expect = 1e-08
Identities = 29/69 (42%), Positives = 38/69 (55%)
Frame = +3
Query: 63 NQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILV 242
N+ G IIF T + + +R G+ A+ +HG +Q R L +FK G S LV
Sbjct: 281 NELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLV 340
Query: 243 ATDVAARGL 269
ATDVAARGL
Sbjct: 341 ATDVAARGL 349
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 51.6 bits (118), Expect = 7e-08
Identities = 29/83 (34%), Positives = 46/83 (55%)
Frame = +3
Query: 21 KENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDE 200
+E+K NVL++ G ++IIF + K AE I R + G C+ G+ +RD
Sbjct: 336 EEHKYNVLVELYGLLTI--GQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDA 393
Query: 201 VLYQFKEGRSSILVATDVAARGL 269
++ F+ G S +LV T+V ARG+
Sbjct: 394 IMDSFRVGTSKVLVTTNVIARGI 416
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 45.6 bits (103), Expect = 5e-06
Identities = 24/83 (28%), Positives = 44/83 (53%)
Frame = +3
Query: 21 KENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDE 200
K+ K + L G T++FV TK E ++ + + G+ ++G Q+ R
Sbjct: 328 KKRKRALELALKGSESGSPDSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLN 387
Query: 201 VLYQFKEGRSSILVATDVAARGL 269
+ F+ G++++LV TDVA+RG+
Sbjct: 388 EINNFRLGKTNLLVVTDVASRGI 410
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 44.4 bits (100), Expect = 1e-05
Identities = 22/77 (28%), Positives = 45/77 (58%)
Frame = +3
Query: 39 VLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFK 218
V+L+++ N + + +IFV+ +A+ + + +HG+ Q +R+E L +F+
Sbjct: 276 VILRQMISNGELKPRVVIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFR 335
Query: 219 EGRSSILVATDVAARGL 269
+G +L+ATD+ ARG+
Sbjct: 336 KGEIWVLIATDLLARGI 352
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 43.6 bits (98), Expect = 2e-05
Identities = 26/61 (42%), Positives = 34/61 (55%)
Frame = +3
Query: 87 IIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARG 266
IIFV R AE I +R +H + Q+ER L +F+ + ILVATDVA+RG
Sbjct: 262 IIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRG 321
Query: 267 L 269
L
Sbjct: 322 L 322
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 43.2 bits (97), Expect = 3e-05
Identities = 22/63 (34%), Positives = 36/63 (57%)
Frame = +3
Query: 81 KTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAA 260
+TIIF +K A + A +HG +Q++R L F++G+ + L+ATDVA+
Sbjct: 506 RTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVAS 565
Query: 261 RGL 269
RG+
Sbjct: 566 RGI 568
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 41.9 bits (94), Expect = 6e-05
Identities = 23/66 (34%), Positives = 35/66 (53%)
Frame = +3
Query: 72 PGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATD 251
PG KT++F + IT + P+ +H Q++R + L +FK +LV TD
Sbjct: 389 PG-KTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTD 447
Query: 252 VAARGL 269
VAARG+
Sbjct: 448 VAARGI 453
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 41.5 bits (93), Expect = 8e-05
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +3
Query: 81 KTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAA 260
K I+F+ + + + + P + +HG + QQ R ++F IL+ T+VAA
Sbjct: 338 KVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAA 397
Query: 261 RGL 269
RGL
Sbjct: 398 RGL 400
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 41.5 bits (93), Expect = 8e-05
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 81 KTIIFVETKRKAENITRNIRRY--GWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDV 254
KTI+F+ + ++ + RR G + +HG + Q R EV +F R +L TD+
Sbjct: 285 KTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDI 344
Query: 255 AARGL 269
ARGL
Sbjct: 345 VARGL 349
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 38.7 bits (86), Expect = 5e-04
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +3
Query: 42 LLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRY-GWPAVCMHGDKTQQERDEVLYQFK 218
LLQ++ + +P ++ I+F+ T + + + + P +H T +R + F+
Sbjct: 282 LLQQL-TSSNPSSRIIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITESFR 340
Query: 219 EGRSSILVATDVAARGL 269
+ +S IL ATDV ARG+
Sbjct: 341 KCQSGILFATDVVARGM 357
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 35.5 bits (78), Expect = 0.005
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Frame = +3
Query: 18 EKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMH-----GDKT 182
+K KL LL+ + D +T+IFVE K A ++ ++ P + H G
Sbjct: 343 DKVFKLLELLKATYRKSD-SVRTVIFVERKATAFTLSLFMKTLNLPNIRAHSFIGHGPSD 401
Query: 183 QQE-------RDEVLYQFKEGRSSILVATDVAARGLGKM*CLMV 293
Q E + + L++FK G+ ++L+AT VA G+ C +V
Sbjct: 402 QGEFSMTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLV 445
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 35.1 bits (77), Expect = 0.007
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 81 KTIIFVETKRKAENITRNIRRYGWP--AVCMHGDKTQQERDEVLYQFKEG-RSSILVATD 251
K I+F + E Y P V +HG + Q R +FK+ + ++L TD
Sbjct: 258 KAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTTD 317
Query: 252 VAARGL 269
+A+RGL
Sbjct: 318 IASRGL 323
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 34.3 bits (75), Expect = 0.012
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Frame = +3
Query: 15 HEKENKLNVLLQE-IGQNQDPGAKTIIFVETKRKAENITRNIRRY----------GWPAV 161
H K L ++ E + Q + +IFVE + AE I R + ++ G AV
Sbjct: 411 HPKLEHLERIVTEYFEKEQTKDTRIMIFVEIRSSAEEILRFLGKFYPNVRPAIFIGQSAV 470
Query: 162 CMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGL 269
+Q+ ++E + QF++G + L+AT + GL
Sbjct: 471 RKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGL 506
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 31.5 bits (68), Expect = 0.083
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +3
Query: 165 MHGDKTQQERDEVLYQFKEGRSS---ILVATDVAARGL 269
+HG +QQ R L F S IL+ TDVAARGL
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGL 510
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.9 bits (59), Expect = 1.0
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Frame = +3
Query: 15 HEKENKLNVLLQEIGQNQDPG---AKTIIFVETKRKAENITRNIRRY----------GWP 155
H K N L LL+E ++ G + +IF E + AE IT + G
Sbjct: 448 HPKMNHLLELLKEHFKDTSEGYQNQRVMIFTEFRNTAEYITTTLLAIRPMVRASLFIGQA 507
Query: 156 AVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGL 269
Q ++ E + QF+ G + LVAT + GL
Sbjct: 508 NSAYSTGMNQMQQKETIDQFRAGVINTLVATSIGEEGL 545
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 323 DQINFNYFILFRGTGGKLLCSV--*LLPELKRH 415
D +NF Y I+F GT G +L +LPE RH
Sbjct: 357 DFLNFLYGIIFAGTAGMMLILSLRVILPEALRH 389
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 294 KPLSITSYQDLWQQHQLLQVYWNDP 220
KP+++ + +QQHQ LQ N P
Sbjct: 143 KPMNLQGFPSAYQQHQYLQSNHNVP 167
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 218 FKLV*YFIPFLLCFVTVHAHSWPSIS 141
+KL +PFL V HA WPS++
Sbjct: 30 YKLWKQNVPFLYDLVITHALEWPSLT 55
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -1
Query: 289 IKHHILPRPLAATSVATSILERPSLNWYNTSSLSCCVLSPCMHT 158
+ ++ LP PL S+ + LE + + + S + +SPCM T
Sbjct: 426 LTYYYLPDPLFLRSITLTDLESATSYFKDDSWMDDDYISPCMTT 469
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 64 TKTLVQR-PLYLLKLKEKRRTLPEISD 141
+KTL + Y L LKEKR LP +SD
Sbjct: 89 SKTLKKHLEAYELALKEKRLKLPNVSD 115
>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 24.6 bits (51), Expect = 9.5
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +2
Query: 116 GEHYQKYQTIWMASCVH 166
GE+Y+K + IW C++
Sbjct: 14 GENYEKNKDIWRRQCIY 30
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 88 LYLLKLKEKRRTLPEISDDMDG 153
LYL L+EKRRT +S+ +G
Sbjct: 213 LYLESLREKRRTYTPLSEISNG 234
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,274,111
Number of Sequences: 5004
Number of extensions: 46315
Number of successful extensions: 154
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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