Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C08
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       72   4e-15
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   3.5  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.0  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 71.7 bits (168), Expect = 4e-15
 Identities = 40/84 (47%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
 Frame = +3

Query: 27  NKLNVLLQEIGQNQ-DPGAK--TIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERD 197
           NK   LL+EI + + D G    T++FVE K+KA+ I   +    +P   +HGD+ Q++R+
Sbjct: 432 NKKKDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQRE 491

Query: 198 EVLYQFKEGRSSILVATDVAARGL 269
           E L  FK GR SILVAT VAARGL
Sbjct: 492 EALADFKSGRMSILVATAVAARGL 515


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 380 CSV*LLPELKRHVTDLDY 433
           CS+   PE+K+ V D++Y
Sbjct: 284 CSMITTPEIKKEVEDMEY 301


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 12  EHEKENKLNVLLQEIGQN 65
           ++  ENKLN  +++IG N
Sbjct: 213 DYNLENKLNYFIEDIGLN 230


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 187 KKGMKYYTNLKRVVPVYL*QLMLLPEVLVR 276
           KK M  Y   ++ +PVY    ++LP V ++
Sbjct: 439 KKVMNLYQQYQQSLPVYQYNDLILPGVTIQ 468


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 99  ETKRKAENITRNIRRYGWPAVCMHGDKTQQERDE 200
           E ++K+    R  R+YG  +     D+T++ER +
Sbjct: 277 EREQKSYKNEREYRKYGETSKERSRDRTERERSK 310


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 277 ILPRPLAATSVATSILERPS 218
           +LPRP++  +   S +E P+
Sbjct: 653 LLPRPISCHTTPDSFIEAPN 672


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,953
Number of Sequences: 438
Number of extensions: 3359
Number of successful extensions: 23
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)