Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C07
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496...   277   6e-75
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972...   276   1e-74
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31...   275   2e-74
03_05_0145 + 21254448-21255488                                         29   1.9  
01_01_1101 + 8731427-8732938                                           29   1.9  
01_05_0674 - 24187820-24188713,24188809-24189204                       29   2.5  
10_08_0510 + 18430580-18431781,18433176-18433554                       29   3.3  
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234...    29   3.3  
01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759     29   3.3  
01_05_0710 + 24492337-24493053                                         29   3.3  
12_01_0843 + 7891622-7892524                                           28   5.7  
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699...    28   5.7  
04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916     28   5.7  
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191...    28   5.7  
04_04_0950 + 29609484-29611025                                         27   7.5  
12_01_0337 - 2591689-2593839                                           27   10.0 
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917...    27   10.0 
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258     27   10.0 

>05_04_0058 +
           17548945-17548947,17549234-17549281,17549618-17549695,
           17549952-17550132,17550223-17550320,17550827-17551258
          Length = 279

 Score =  277 bits (678), Expect = 6e-75
 Identities = 124/175 (70%), Positives = 146/175 (83%)
 Frame = +3

Query: 24  ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 203
           ARG KKHLKRLNAP  WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT  EV
Sbjct: 18  ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77

Query: 204 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKY 383
           + I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I  E+AK+
Sbjct: 78  ISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKF 137

Query: 384 KLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFD 548
           KLCKVR V  G K +P+L T+DGRT+RYPDPLIK ND++++D+ TNKI+DFIKFD
Sbjct: 138 KLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFD 192


>01_03_0277 +
           14496298-14496300,14496875-14496952,14497061-14497241,
           14497348-14497445,14497542-14497979
          Length = 265

 Score =  276 bits (676), Expect = 1e-74
 Identities = 122/176 (69%), Positives = 147/176 (83%)
 Frame = +3

Query: 21  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60

Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
           V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF +  +  E+AK
Sbjct: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120

Query: 381 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFD 548
           +KLCKVR V  G K +PYL T+DGRT+RYPDPLIK ND++++D+ TNKI+DFIKFD
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFD 176


>02_01_0047 -
           316960-317397,317647-317744,317837-318017,318122-318199,
           319023-319025
          Length = 265

 Score =  275 bits (674), Expect = 2e-74
 Identities = 121/176 (68%), Positives = 147/176 (83%)
 Frame = +3

Query: 21  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 200
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT  E
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60

Query: 201 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 380
           V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF +  +  E+AK
Sbjct: 61  VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120

Query: 381 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFD 548
           +KLCKVR V  G K +PYL T+DGRT+RYPDP+IK ND++++D+ TNKI+DFIKFD
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFD 176


>03_05_0145 + 21254448-21255488
          Length = 346

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +2

Query: 392 QGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHL 514
           +G ARR  P++R     A    A  P PA    R G   HL
Sbjct: 117 KGRARRRTPEQRRPKEAAGNGRARSPSPASAQRRYGGGEHL 157


>01_01_1101 + 8731427-8732938
          Length = 503

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 206 KHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAAQLVQ--HP 72
           +HL+     L P     H R A A L+ + R P R HAA LV+  HP
Sbjct: 29  RHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRVHP 75


>01_05_0674 - 24187820-24188713,24188809-24189204
          Length = 429

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +2

Query: 398 AARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQD 526
           AA R  P   A    A    AP P P+HQ  ++  +RH    D
Sbjct: 149 AANRRAPAAAAKHRPAADQFAPPPAPSHQWAKIKRSRHATDHD 191


>10_08_0510 + 18430580-18431781,18433176-18433554
          Length = 526

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 529 MILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 380
           M  L +   CTE+  +      R ++P  +T YGTLL   AT+  L  ++
Sbjct: 193 MDYLCKNGRCTEARKIFDSMTKRGLKPD-ITTYGTLLQGYATKGALVEMH 241


>10_08_0509 +
           18419815-18422150,18422249-18422291,18423154-18423487,
           18423766-18423878,18424461-18424589,18424771-18424864,
           18424967-18425050,18425859-18426047,18426897-18427017,
           18427476-18427692
          Length = 1219

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 529 MILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 380
           M  L +   CTE+  +      R ++P  +T YGTLL   AT+  L  ++
Sbjct: 311 MDYLCKNGRCTEARKMFDSMTKRGLKPE-ITTYGTLLQGYATKGALVEMH 359


>01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759
          Length = 428

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 389 VQGAARRDRPQERAVPGDARRAHAPVPG 472
           ++GA RR R  E+A+P   +   AP PG
Sbjct: 4   LRGAKRRKRQPEKALPAAGQAMPAPAPG 31


>01_05_0710 + 24492337-24493053
          Length = 238

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -3

Query: 520 LVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWI 350
           L  M + T +F L++   +  +RPS +     LLG + +RR        ++ V+RW+
Sbjct: 93  LASMPTLTPAFALLTAIRHHPLRPSPLPLATPLLGHLLSRRRARE----AASVVRWL 145


>12_01_0843 + 7891622-7892524
          Length = 300

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 371 RSQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGE 490
           R  V    G  R  +P++ A       AHAP P P+  G+
Sbjct: 37  RKAVSGSGGGRRGRKPKKAATAATLAPAHAPAPAPSVAGK 76


>06_01_0906 +
           6990892-6991615,6992480-6992679,6992822-6993002,
           6993855-6994046,6994492-6994724,6995537-6995638,
           6995776-6995826,6996234-6996338,6997287-6997353,
           6997946-6997962
          Length = 623

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 386 AVQGAARRDRPQERAVPGDARRA-HAPVPGPAHQGERLGAA 505
           A +G  R+ R      P DA  A HAP P P  +G + GAA
Sbjct: 98  APRGRGRKSRRGRPEPPSDAGAAPHAP-PSPPRRGAKKGAA 137


>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
          Length = 234

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
 Frame = +2

Query: 374 SQVQAVQGAARRDRPQERAVPGDARRA---HAPVPGPAHQGERLGAARHLHQQDHG 532
           ++  A  G A R RP     P  A  A   H P P  +   +R    RH H   HG
Sbjct: 53  TETPAADGDAARKRPSAGDAPAPAPLADKRHRPNPPSSGSRDRDRHHRHGHSHSHG 108


>02_01_0285 -
           1913425-1914065,1914094-1914177,1914249-1915140,
           1915205-1915249,1915335-1915870,1915987-1916041
          Length = 750

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 315 FRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGP 419
           + LIYD++G   +  + P++A   L  +  V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181


>04_04_0950 + 29609484-29611025
          Length = 513

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 220 CFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 92
           CF  +  +  V+  + R +RK  + K +  L GP +G   Y P
Sbjct: 468 CFLAVLVAFAVAWAVRRRQRKAAAEKPADGLLGPTKGSALYDP 510


>12_01_0337 - 2591689-2593839
          Length = 716

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 451 PSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYI 323
           P C + Y  +L P+A  + LH+ +  S   I   + LP  S +
Sbjct: 99  PRCASAYAAVLVPLAEAKHLHAAHPVSVRAIHLGLLLPLVSLL 141


>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
            26892215-26892266,26893530-26893795,26894007-26894229,
            26895154-26895327,26895408-26895485,26895566-26895817,
            26896138-26898204,26899477-26901322,26901474-26901574,
            26902179-26902535,26902681-26902799,26903558-26903559,
            26903630-26903662,26903709-26903841,26904285-26904537,
            26905688-26905912,26906401-26906466,26907373-26907471,
            26908528-26908545,26908546-26908893,26909878-26910354
          Length = 2522

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 238  TGKCGLTPRTRRDLWTLYPLRKQMSYSV*YMM*KEGSLSTVSHLKKPSTSCAR 396
            +GK  L  R +RDL  L   RK  S ++   + K   L  +   K  + SCA+
Sbjct: 2107 SGKSLLVERLKRDLENLKKSRKSASSTLRKALQKAAQLRLMEKEKNKTPSCAK 2159


>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
          Length = 874

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = -3

Query: 130 LWGPVEGRGAYTPPSLSNIHALGAFKR 50
           L G   G G Y PPSLSN   + AFKR
Sbjct: 51  LLGHGHGVGVYYPPSLSNA-LVAAFKR 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,795,491
Number of Sequences: 37544
Number of extensions: 345462
Number of successful extensions: 1208
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)