Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C06
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    30   0.18 
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    28   0.98 
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   3.0  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   4.0  
SPCC126.13c |||histone deacetylase complex subunit, SAP128 famil...    26   4.0  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.1  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   9.1  

>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 5/111 (4%)
 Frame = +3

Query: 102 SYKDGEQVVLWMNTVGPYHNRQE-----TYAYFSLPFCVGTKVTIGHYHETLSEALQGVE 266
           +Y  G  +   +NT+ P+           Y Y+   F       I    E+L   L G  
Sbjct: 36  NYPPGASIDTTVNTISPFIGDGRGSDIFNYEYYDERFHFCRPENIAKQSESLGSVLFGDR 95

Query: 267 LEFSGLDITFKDNVPAQQFCAIELNEQSYKALVYAVKNHYWYQMYIDDLPI 419
           L  S ++I   +N      CA  +       +   +  +Y     ID+LP+
Sbjct: 96  LYNSPIEIKMLENQDCVPLCASIIPSSDVSFIRDLISKNYVVNWNIDNLPV 146


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 244 RKRFKESNWNSVVSTLRSKIM-CRLNNFVPLNS 339
           ++RF   +  ++ + LR +++ CRLNNF  LN+
Sbjct: 2   KQRFSALDIAAIAAELREQVVGCRLNNFYDLNA 34


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 510 RQSCFRYIRCQISCESRC 457
           R+ CF+ + C I+C  +C
Sbjct: 505 RKDCFKCVECGITCHGQC 522


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 152  WAYGIHPQHHLFTIFI*VCMFVTI 81
            WAYG+    ++ +++I V MF+T+
Sbjct: 1481 WAYGLFIAWNIISMYIFVNMFITV 1504


>SPCC126.13c |||histone deacetylase complex subunit, SAP128 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 134 DEYR-RPISQSSGDVCIFFITILCGNKSYYRT 226
           D+Y+ RPI++  G VC+    +  GNK   RT
Sbjct: 93  DKYKDRPIARDLGTVCLHNPKLFQGNKLLKRT 124


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -1

Query: 425 TPYRQIIYVHLIPIV--ILNSINQGLVGLLIEFNGTKLLSRHIIFE 294
           +P+  +I +H +  +  IL+  N G+V  +++ NGT L +  I+ +
Sbjct: 533 SPWNMMIVLHGLTTIGWILSRENLGIVENIMQNNGTNLKNWRILLK 578


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 15  SSATKLFIMKFLYLLFIFCTIV 80
           SS+TK+ +  FLYL+  F  I+
Sbjct: 423 SSSTKITVFIFLYLMLTFIGII 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,392,756
Number of Sequences: 5004
Number of extensions: 52582
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)