Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C05
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    51   8e-08
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    51   8e-08
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    29   0.48 
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    27   1.9  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   2.6  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   2.6  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   3.4  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   3.4  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    26   3.4  
SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces...    25   4.5  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    25   5.9  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          25   5.9  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    25   7.9  
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce...    25   7.9  

>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 51.2 bits (117), Expect = 8e-08
 Identities = 28/60 (46%), Positives = 31/60 (51%)
 Frame = +2

Query: 224 GKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSNS 403
           GKVHGSLARAGKVK QTP                  + Y RRFVNV    G +R  N +S
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 51.2 bits (117), Expect = 8e-08
 Identities = 28/60 (46%), Positives = 31/60 (51%)
 Frame = +2

Query: 224 GKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVNVVQTFGRRRGPNSNS 403
           GKVHGSLARAGKVK QTP                  + Y RRFVNV    G +R  N +S
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 41  THVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAP 154
           T   D+N QES+  +     LL +VES    L MC AP
Sbjct: 120 TEAGDINRQESVSMVPP---LLLNVESHHKVLDMCAAP 154


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 408 FYELELGPRRRPKVWTTFTNLLLYWILRLARPVLFFFFCC 289
           FYEL      RP + +    LL+ +++  ++ +L FFF C
Sbjct: 6   FYELYNIKNIRPLIPSFHVCLLIMFLILYSQEILSFFFMC 45


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 475 FFFFFLKQKRCYICIVVLFTELILRVRVGSTTAAEGLDNV 356
           FF+ FL   R  +C + +FTE+       ST + E LD +
Sbjct: 129 FFYAFLNI-RTLVCGITIFTEIARYSMYHSTLSVEKLDEM 167


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -3

Query: 264  LTLPARARDPCTLPPRRGTVRSSSVDESSDTRHESSR 154
            +TLP   RDP   P          V E+S   HE SR
Sbjct: 1562 MTLPIELRDPSLYPQVNSDSSLEDVKENSFRPHEISR 1598


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = -2

Query: 133  SHLLTLNISKK----PEAILDITDGFLTIHVKDVRRLTSNV 23
            +++ T+NIS+K      + LDI    + ++V+D R   +NV
Sbjct: 1102 NYVTTMNISEKGYSMDSSCLDIGVSIILVYVRDTRAFVANV 1142


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 104 LADVESEEVTLSMCGAPLEDSCLVSELSSTELDLTVPLLGG 226
           ++D  +EE++ ++ GAP+ +S      S   L  T P + G
Sbjct: 119 VSDTNNEEISKNIYGAPILESTSSDFQSKDSLSTTQPSVSG 159


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 312 VLFFFFCCFSTLGVWPLTLPAR 247
           +++ FFCC S +GV  +  P R
Sbjct: 331 IVYSFFCCLSAVGVLHMLNPFR 352


>SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 155

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 407 NQFCK*YNNANIT-SFLLQKKK 469
           N FC  Y NA ++ SFLLQ KK
Sbjct: 78  NAFCVDYENAPLSESFLLQAKK 99


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 320 HVRSSSFSFAVSLLWASGL*LYQHEPGIRALYH 222
           +V ++S       LW++ L + QHE G  ALY+
Sbjct: 159 NVANNSLKVKPLTLWSTLLYIVQHEGGYPALYN 191


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 53  DVNGQESIGDIKNRLRLLADVESEEVTLSMCGAP 154
           ++N QE++  +     L  DVE   V L MC AP
Sbjct: 140 NINRQEAVSMLPP---LFLDVEPHHVILDMCAAP 170


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 268 PD-AQSRETAKEKEEDRTC*AQDPIQQEIRERCPDLRPPSWTQ 393
           PD AQ  E    K+ED     +D  ++ +  + P +  P W Q
Sbjct: 17  PDSAQPMELDVSKKEDTEPEVRDEAKEFLLSQLPQVEVPEWAQ 59


>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 155 LEDSCLVSELSSTELDLTVPLLGGKVHGSLARA 253
           + D+CL++E + TEL ++   L  K+ G L RA
Sbjct: 199 IRDACLLAEQAETEL-ISNKRLSTKLPGRLQRA 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,844,899
Number of Sequences: 5004
Number of extensions: 32901
Number of successful extensions: 103
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)