Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C04
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    31   0.13 
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    28   0.92 
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    28   0.92 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   0.92 
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    27   1.6  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   2.1  
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    27   2.1  
SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex sub...    26   3.7  
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    26   3.7  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    25   4.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   6.5  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   6.5  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    25   8.5  

>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = -3

Query: 484 IRRSAPTAPTFMVFPSIMRASNVVSPSSSGLPPYPTVPSHCSTSQTVAPCSIASR 320
           ++R   +AP   ++ S   +S  + P+       PT+PS+ + + T +P S++ R
Sbjct: 135 VQRLPASAPKHDLYSSANASSASLHPTEQRTTSSPTIPSYANRTHTDSPTSLSHR 189


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -3

Query: 472 APTAPTFMV-FPSIMRASNVVSPSSSGLPPYPTVPSHCSTSQTVAPCSIASRAELPLS 302
           +PT+PT    FPS   +  +VS   +G P  P  P   S+S +    S AS +  P++
Sbjct: 179 SPTSPTTSAAFPSSFSSLPLVSSKPTGTPFVPKSPP--SSSPSTTNVSNASTSSAPIN 234


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = -2

Query: 341 TLFYCIQG*ITTFYNSPSSLSRISK*PRSNYYWNISFTMHHRY*KTTVYKNI-VKYHDEC 165
           T+F  +Q  +  F    +S+S+ S     N   N     +    K   + +  +K++ EC
Sbjct: 434 TIFGRLQNVLHDFVEGETSISKESLQQHKNTIENQLAAANWDCQKIDEFMDAELKFYKEC 493

Query: 164 YTSRLQVCIRNVK*CYYSILQVN 96
            TS+ +  I++V  C Y   Q N
Sbjct: 494 QTSQWEEIIKSVHECIYKWAQTN 516


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 469 PTAP-TFMVFPSIMRASNVVSPSSSGLPPYPTVPSHCSTSQTVAPCSIASRAELPLSIT 296
           PT P T     SI       S + +   P PT  + C+TS ++ P   +S    P++ T
Sbjct: 136 PTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPT 194



 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -3

Query: 427 ASNVVSPSSSGLPPYPTVPSHCSTSQTVAPCSIASRAELPLSIT 296
           +++  S + S   P P+  + C+TS ++ P   +S    P++ T
Sbjct: 94  STSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPT 137



 Score = 25.4 bits (53), Expect = 4.9
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
 Frame = -3

Query: 466 TAPTFMVFPSIMRASNVVSPSSSGLPPYPTVPSHCSTSQ--TVAPCSIASRAELPLSITP 293
           T P    FPS    S + S S S +P   T     STS    +   S +S +    S TP
Sbjct: 691 TPPPTTSFPSTFTTSFITSSSLSSIPNNSTEVKTASTSSGTEIKTASTSSGSSSSSSYTP 750



 Score = 24.6 bits (51), Expect = 8.5
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -3

Query: 469 PTAP-TFMVFPSIMRASNVVSPSSSGLPPYPTVPSHCSTSQTVAP 338
           PT P T     SI       S + +   P PT  + C+TS ++ P
Sbjct: 249 PTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPP 293


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = -2

Query: 461 TNIHGLPIHNESIQCSLTIFIWTSTISDCSITLLYFTNCCTLFYCI 324
           TN++   + + S    + ++ WT T+S C++   +  N  T  Y +
Sbjct: 284 TNLYMSTLPHSSTVAIMYVYSWTGTVSLCNLVSSWILNTKTHSYAL 329


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -3

Query: 427 ASNVVS-PS-SSGLPPYPTVPSHCSTSQTVAPC 335
           ASNV S PS S+  PP  T+PS  ++SQ+V  C
Sbjct: 104 ASNVPSTPSDSTQQPPTNTLPSVSASSQSVETC 136


>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 430 RASNVVSPSSSGLPPYPTVPSHCSTSQ 350
           + SN+V+ S SG+ P P++ SH + ++
Sbjct: 195 KLSNIVNASKSGIGPPPSLLSHATLAR 221


>SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex
           subunit Rpc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/53 (24%), Positives = 21/53 (39%)
 Frame = +3

Query: 228 CERNIPIVITTWSFTNSTQRAWGVIESGNSALDAIEQGATVCEVEQCDGTVGY 386
           C  + PI    +S     Q+    +  G  A ++ +Q    CE  +CD    Y
Sbjct: 28  CPYHFPISTFLYSRHEFAQKEVDDVLGGEEAFESNQQTEVTCENTKCDNNRAY 80


>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = +3

Query: 312 NSALDAIEQGATVCEVEQCDGTVGYGGSPDEDGETTLDALIMDG 443
           N  +  + QG  + + E CD  V  GG    D    +  L  +G
Sbjct: 114 NPTVGNVNQGLEIVKKENCDSMVSIGGGSAHDCAKGIALLATNG 157


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +3

Query: 177 IFYYILINCCFLISMVHCERNIPIVITTWSFTNSTQRAW 293
           IF   L+N  + +S  H + N       WSF     R+W
Sbjct: 435 IFVSALLNAGYRVSGSHAKSNAIKTNAPWSFVWDVLRSW 473


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
 Frame = -3

Query: 469  PTAPTFMVFPSIMRA----SNVVSPSSSGLPPYPTVPSHCSTSQTVAPCSIASRAELPLS 302
            P AP   V P   +A    +N  +PSS+  PP P      +      P  I S A+ P S
Sbjct: 1448 PPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPS 1507


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 388 PYPTVPSHCSTSQTVAPCSIASRAELPLSITP 293
           PY   P   ST+  VAP SI      PL+  P
Sbjct: 639 PYGNNPLFSSTTSQVAPTSIQEPIASPLTSKP 670


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 210 LISMVHCERNIPIVITTWSFTNSTQRAW-GVIESGNSALDAIEQGATVCE 356
           L++ V C    P V  T       Q    G+IE G    DA+  G T+C+
Sbjct: 20  LVTFVTC--GFPNVDETIKIMQGLQNGGAGIIELGIPFSDAVADGPTICK 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,032,647
Number of Sequences: 5004
Number of extensions: 41064
Number of successful extensions: 145
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)