Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_C04
(504 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0711 - 27468045-27468264,27468831-27468935,27469431-274694... 110 7e-25
03_05_0219 - 22059388-22059729,22059838-22059999 49 2e-06
04_04_1628 + 34874688-34874915,34875182-34875232,34875532-348756... 48 6e-06
04_04_1391 + 33195508-33195903,33197506-33197592,33197678-33198196 37 0.008
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 33 0.13
01_06_1210 + 35430143-35430796,35430912-35431004,35431397-354315... 32 0.23
05_03_0458 + 14280953-14281866,14281964-14282912 31 0.40
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753... 30 0.92
07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035... 29 1.6
01_01_0369 - 2886060-2886272,2886721-2887434 29 2.1
03_04_0143 + 17670103-17670430,17670511-17670785,17670897-176713... 28 3.7
11_06_0033 - 19437746-19437916,19438063-19438145,19438266-194383... 28 4.9
07_03_1421 - 26451012-26451155,26451256-26451322,26451605-264516... 28 4.9
11_06_0253 - 21716164-21717144 27 6.5
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 27 6.5
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 27 8.6
03_06_0692 + 35585445-35586008,35586222-35586560 27 8.6
03_02_0966 + 12783515-12783901 27 8.6
02_02_0264 + 8404879-8405106 27 8.6
>04_04_0711 -
27468045-27468264,27468831-27468935,27469431-27469489,
27469566-27470009,27470123-27470187,27470871-27471066,
27471429-27471590
Length = 416
Score = 110 bits (264), Expect = 7e-25
Identities = 50/89 (56%), Positives = 66/89 (74%), Gaps = 4/89 (4%)
Frame = +3
Query: 243 PIVITTWSFTNSTQRAWGVIES----GNSALDAIEQGATVCEVEQCDGTVGYGGSPDEDG 410
P+V++TW F + + AW V+ + G SA+DA+ G + CEV +CDGTVG GGSPDE+G
Sbjct: 71 PVVVSTWPFREAVRAAWEVVSASGGAGCSAVDAVVAGCSACEVLRCDGTVGPGGSPDENG 130
Query: 411 ETTLDALIMDGKTMNVGAVGALRRIKNAI 497
ETTLDALIMDG TM +GAV A+R +K+ I
Sbjct: 131 ETTLDALIMDGTTMEIGAVAAMRYVKDGI 159
>03_05_0219 - 22059388-22059729,22059838-22059999
Length = 167
Score = 49.2 bits (112), Expect = 2e-06
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +3
Query: 288 AWGVIESGNSALDAIEQGATVCEVEQCDG-TVGYGGSPDEDGETTLDALIMDGKTMNVGA 464
A + SG +ALD +E V E+E C G G DG ++A +MDG T+ GA
Sbjct: 37 ATAALRSGRAALDVVE--LVVRELENCPHYNAGVGSVLTADGTVEMEAAVMDGNTLRCGA 94
Query: 465 VGALRRIKNAISV 503
V L + NA+S+
Sbjct: 95 VSGLSTVVNAVSL 107
>04_04_1628 +
34874688-34874915,34875182-34875232,34875532-34875652,
34875739-34875788,34876395-34876524,34877007-34877170,
34877262-34877300,34877301-34877464,34877808-34877931,
34878002-34878103,34878208-34878297
Length = 420
Score = 47.6 bits (108), Expect = 6e-06
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +3
Query: 288 AWGVIESGN-SALDAIEQGATVCEVEQCDGTVGYGGSPDEDGETTLDALIMDGKTMNVGA 464
A V+ GN ++LDA+ V E + G G + E G DA IMDG T GA
Sbjct: 70 AAAVLREGNGTSLDAVAAAIQVLEDDPITNA-GRGSNLTESGHVECDASIMDGSTTTFGA 128
Query: 465 VGALRRIKNAISV 503
VGA++ +KN I +
Sbjct: 129 VGAVQGVKNPIQI 141
>04_04_1391 + 33195508-33195903,33197506-33197592,33197678-33198196
Length = 333
Score = 37.1 bits (82), Expect = 0.008
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 300 IESGNSALDAIEQGATVCEVEQCDG-TVGYGGSPDEDGETTLDALIMDGKTMNVGAVGAL 476
+ SG +ALD +E A V E+E G G + G ++A IMDG+ GAV +
Sbjct: 41 LRSGAAALDVVE--AVVRELESDPFFNSGRGSALTRLGTVEMEASIMDGRGRRCGAVSGV 98
Query: 477 RRIKNAISV 503
+KN +S+
Sbjct: 99 STVKNPVSL 107
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 33.1 bits (72), Expect = 0.13
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 472 APTAPTFMVFPSIMRASNVVSPSSSGLPPY-PTVPSHCSTSQTVAPCS 332
+PT+P++ + S+ SPSS L PY T P++ TS T +P S
Sbjct: 1740 SPTSPSYNPSSAKYSPSHAYSPSSPRLSPYSQTSPNYSPTSPTYSPTS 1787
>01_06_1210 +
35430143-35430796,35430912-35431004,35431397-35431546,
35431817-35432076,35433378-35433641,35434475-35434682
Length = 542
Score = 32.3 bits (70), Expect = 0.23
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -3
Query: 490 FLIRRSAPTAPTFMVFPSIMRASNVVSPSSSGLPPYP--TVPSHCSTSQTVAPCSIASRA 317
FL+ AP A F FPS +S+ SP ++ PP +VP++ S+ +T S S A
Sbjct: 31 FLLFSPAPAALPFFSFPSSHLSSSSSSPIAATPPPLTPVSVPANASSPETPVDASGGSNA 90
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 31.5 bits (68), Expect = 0.40
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -3
Query: 424 SNVVSPSSSGLPPYPTVPSHCSTSQTVAPCSIASRAELPLSITP 293
S SPS+S LPP PT P S+S+ AP S + S +P
Sbjct: 96 SPTTSPSASSLPPVPT-PRSASSSKCSAPTSAQTPTRFLSSSSP 138
>05_03_0031 -
7534327-7534480,7535546-7535649,7535724-7535793,
7535889-7535932,7536042-7536146,7536223-7536344,
7536807-7536894,7536966-7537052,7537718-7537786,
7537859-7538188,7539777-7539824,7540003-7540069,
7540150-7540208,7541220-7541453,7541536-7541601,
7541684-7541883,7542104-7542197,7542295-7542414,
7542596-7542703,7542808-7542871,7543378-7543409,
7546049-7548007
Length = 1407
Score = 30.3 bits (65), Expect = 0.92
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -2
Query: 338 LFYCIQG*ITTFYNSPSSLSRISK*PRSNYYWNISFTMHHRY*KTTVYKNIVKYHDECYT 159
L CI +T PS + P S+YY+++ +++ + T ++ CYT
Sbjct: 745 LLDCIVSKVTIVQVPPSVDGKSKSVPSSDYYYDMKYSIDYSTFSTIEMEDTDDLMQSCYT 804
Query: 158 SRL 150
SR+
Sbjct: 805 SRI 807
>07_03_0471 +
18501496-18502104,18503009-18503260,18503367-18503537,
18503693-18503743,18503868-18503960,18504125-18504220,
18504318-18504368,18504452-18504570,18504909-18505017,
18505391-18505513,18505590-18505661,18505963-18506034,
18506125-18506191,18506260-18506402,18506494-18506565,
18506632-18506760,18507317-18507472,18507579-18507692,
18507791-18507889,18507974-18508051,18508402-18508536,
18509081-18509155,18509247-18509361,18509458-18509828,
18509903-18509965,18510049-18510120,18510285-18510413,
18510512-18510628,18510902-18511018
Length = 1289
Score = 29.5 bits (63), Expect = 1.6
Identities = 22/64 (34%), Positives = 29/64 (45%)
Frame = -3
Query: 478 RSAPTAPTFMVFPSIMRASNVVSPSSSGLPPYPTVPSHCSTSQTVAPCSIASRAELPLSI 299
RSAP PT P + ++ SPSSS PP P P S +AP + S
Sbjct: 57 RSAP--PTSA--PGVPGSAGSPSPSSSSWPPPPPPPPDASQDPDLAPREATTPPASSSSP 112
Query: 298 TPQA 287
+P+A
Sbjct: 113 SPRA 116
>01_01_0369 - 2886060-2886272,2886721-2887434
Length = 308
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = -3
Query: 445 FPSIMRASNVVSPSSSGLPPYPTVPSH----CSTSQTVAPCSIASRAELP 308
FPS+++ V +P + PP P P H CST + P + +A P
Sbjct: 113 FPSLVQPPRVQAPYVAPPPPPPPPPGHPAYQCSTIRPTTPSLPSLKAAFP 162
>03_04_0143 +
17670103-17670430,17670511-17670785,17670897-17671376,
17671454-17671849,17673215-17673289,17673939-17673960,
17674041-17674129,17675204-17675495,17676019-17676087,
17676394-17676572
Length = 734
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 440 IHNESIQCSLTIFIWTSTISDCSITLLYFTNCCTLFYCIQG 318
+ NE QC+ +F+ I + L +++N TL Y IQG
Sbjct: 71 VSNELFQCT-GVFVVRRVIEPRGLLLPHYSNGATLVYVIQG 110
>11_06_0033 -
19437746-19437916,19438063-19438145,19438266-19438359,
19438478-19438551,19438825-19438861,19440767-19440844,
19440927-19441022,19441719-19441815,19441910-19442015,
19442136-19442208,19442537-19442680,19443241-19443681
Length = 497
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 427 ASNVVSPSSSGLPPYPTVPSHCSTSQTVA 341
AS+++S ++SGLPP P PS S A
Sbjct: 2 ASSLLSSAASGLPPKPQPPSSTPPSSASA 30
>07_03_1421 -
26451012-26451155,26451256-26451322,26451605-26451657,
26451736-26451806,26453340-26453482,26453858-26453919,
26454008-26454100,26454203-26454314,26454432-26454547,
26454625-26454787,26454829-26455349,26455429-26455528,
26457472-26457552,26457666-26457877
Length = 645
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 324 DAIEQGATVCEVEQCDGTVGYGGSPDEDGETTLDALIM 437
+A G+TVC+V DGT G + E L+ +++
Sbjct: 333 EAFRAGSTVCKVVPFDGTSLVNGETQKKAEEVLEEVLL 370
>11_06_0253 - 21716164-21717144
Length = 326
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -3
Query: 496 IAFLIRRSAPTAPTFMVFPSIMRASNVVSPSSSGLPPYPTVP-SHCSTSQTV 344
++F R PT +V P I + V P+S G P PT H S TV
Sbjct: 111 VSFAFDRLGVRVPTLLVSPWIEPGTVVHDPASCGGAPEPTSQFEHSSIPATV 162
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -3
Query: 472 APTAPTFMVFPSIMRASNVVSPSSSGLPPYPTVPSHCSTSQTVAPCS 332
+PT+P++ P+ S SP+S PT PS+ TS + +P S
Sbjct: 1714 SPTSPSYSYSPT----SPSYSPTSPSYNYSPTSPSYSPTSPSYSPTS 1756
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -3
Query: 442 PSIMRASNVVSPSSSGLPPYPTVPSHCSTSQTVAPCSIASRAELPLSITP 293
P + +S V PS++ LPP P P P +IA LPL P
Sbjct: 210 PPLPASSEPVDPSAASLPPLPPPP-----PPPPKPANIAGAPGLPLPPPP 254
>03_06_0692 + 35585445-35586008,35586222-35586560
Length = 300
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 490 FLIRRSAPTAPTFMVFPSIMRASNVVSPSSS 398
FL++ + P APTF VF ++ + +P S
Sbjct: 185 FLVQVAIPVAPTFKVFMALTKFEGFTAPPYS 215
>03_02_0966 + 12783515-12783901
Length = 128
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -3
Query: 487 LIRRSAPTAPTFMVFPSIMRASNVVSPSSSGLP 389
L R S+P AP P+ R + VV SSSG P
Sbjct: 22 LARVSSPAAPMKAASPAAARRAVVVRASSSGEP 54
>02_02_0264 + 8404879-8405106
Length = 75
Score = 27.1 bits (57), Expect = 8.6
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Frame = -3
Query: 472 APTAPTFMVFPSIMRASNVVS--PSSSGLPPYPTVPSHCSTS-QTVAPCSIASR 320
A A F RA N S P + PYP +PS S+S T P SR
Sbjct: 2 ATNAHAFQTTTETARAQNTASVPPHAPSRTPYPPLPSSSSSSTPTPTPVLAVSR 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,195,123
Number of Sequences: 37544
Number of extensions: 234163
Number of successful extensions: 855
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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