Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_C04
(504 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50198-2|AAA91260.2| 363|Caenorhabditis elegans Hypothetical pr... 87 5e-18
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 33 0.089
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 31 0.47
Z68320-1|CAB63328.2| 278|Caenorhabditis elegans Hypothetical pr... 31 0.63
AL110484-28|CAB54395.2| 419|Caenorhabditis elegans Hypothetical... 31 0.63
AC024801-12|AAF59643.4| 569|Caenorhabditis elegans Hypothetical... 30 0.83
AF038612-3|AAB92045.2| 432|Caenorhabditis elegans Hypothetical ... 29 1.4
Z81553-8|CAB04497.1| 408|Caenorhabditis elegans Hypothetical pr... 28 3.3
AC024790-3|AAF60637.1| 446|Caenorhabditis elegans Hypothetical ... 28 3.3
U58752-8|AAB00670.1| 308|Caenorhabditis elegans C-type lectin p... 28 4.4
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 28 4.4
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 28 4.4
AJ252168-1|CAB65731.1| 346|Caenorhabditis elegans T-box DNA bin... 28 4.4
AF025468-3|AAF02176.1| 346|Caenorhabditis elegans Male abnormal... 28 4.4
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p... 27 5.8
U56081-1|AAB37243.1| 346|Caenorhabditis elegans T-BOX 12 protein. 27 5.8
U20864-2|AAN65320.1| 174|Caenorhabditis elegans Hypothetical pr... 27 5.8
U20864-1|AAC46663.1| 243|Caenorhabditis elegans Hypothetical pr... 27 5.8
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C... 27 5.8
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A... 27 5.8
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein. 27 5.8
Z92803-13|CAB07249.2| 331|Caenorhabditis elegans Hypothetical p... 27 7.7
AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical... 27 7.7
AL021482-4|CAA16341.2| 331|Caenorhabditis elegans Hypothetical ... 27 7.7
>U50198-2|AAA91260.2| 363|Caenorhabditis elegans Hypothetical
protein R04B3.2 protein.
Length = 363
Score = 87.4 bits (207), Expect = 5e-18
Identities = 47/111 (42%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Frame = +3
Query: 180 FYYILINCCFLISMVHCERNIPIVITTWS---FTNSTQRAWGVIESGNSALDAIEQGATV 350
FY L+ ++ ++ + ++P+VITTW F +T+ A G +E G +
Sbjct: 4 FYIFLLLIPYINGTIN-DDSLPMVITTWGSDGFKKATKNAVDATLLGGRMFGLVE-GLST 61
Query: 351 CEVEQCDGTVGYGGSPDEDGETTLDALIMDGKTMNVGAVGALRRIKNAISV 503
CE QCD TVGYGGSPDE+GET LD+L++D M VGAV L RI++A V
Sbjct: 62 CEALQCDTTVGYGGSPDENGETCLDSLVIDADGMRVGAVANLHRIRDAARV 112
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 33.5 bits (73), Expect = 0.089
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = -3
Query: 475 SAPTAPTFMVFPSIMRASNVVSPSSSGLPPYPTVPSHCST--SQTVAPCSI 329
S+P+AP+ PS + V+PSSS +P P+ PS ++ S+T AP ++
Sbjct: 1623 SSPSAPSIPSIPSTLP----VAPSSSSVPSSPSAPSESTSTVSETPAPVNV 1669
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 31.1 bits (67), Expect = 0.47
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 403 SSGLPPYPTVPSHCSTSQTVAPCSIASRAELPLSITPQ 290
S LPP TVP +T P + SR E+P+++TP+
Sbjct: 716 SMTLPP-ETVPPKTEAPRTEVPMTGPSRTEVPMTVTPE 752
>Z68320-1|CAB63328.2| 278|Caenorhabditis elegans Hypothetical
protein W07A12.5 protein.
Length = 278
Score = 30.7 bits (66), Expect = 0.63
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 369 DGTVGYGGSPDEDGETTLDALIMDG 443
DG GY GSP + G+ L+ +I DG
Sbjct: 103 DGNDGYPGSPGKSGQDALERMITDG 127
>AL110484-28|CAB54395.2| 419|Caenorhabditis elegans Hypothetical
protein Y38E10A.4 protein.
Length = 419
Score = 30.7 bits (66), Expect = 0.63
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 391 PPYPTVPSHCSTSQTVAPCSIASRA 317
PP P +PS C++S +AP +I+S A
Sbjct: 294 PPTPVIPSMCNSSMIMAPGTISSPA 318
>AC024801-12|AAF59643.4| 569|Caenorhabditis elegans Hypothetical
protein Y50D7A.8 protein.
Length = 569
Score = 30.3 bits (65), Expect = 0.83
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3
Query: 424 SNVVSPSSSGLPPYPTVPSHCSTSQTVAPCSIASRAEL 311
S + PSSS LPP P PS ST++ V P + L
Sbjct: 429 STINEPSSSSLPP-PQQPSTSSTTEPVPPSRVIDEQTL 465
>AF038612-3|AAB92045.2| 432|Caenorhabditis elegans Hypothetical
protein F13B6.3 protein.
Length = 432
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 445 FPSIMRASNVVSPSSSGLPPYPTVPSHCSTSQTVAP 338
FP+ RA N P S PP T P+ C T+ T P
Sbjct: 374 FPTT-RAPNTACPPVSTCPPVVTCPASCITTTTEIP 408
>Z81553-8|CAB04497.1| 408|Caenorhabditis elegans Hypothetical
protein F56H6.8 protein.
Length = 408
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 430 RASNVVSPSSSGLPPYPTVPSHCSTSQTVAPCSIASR 320
RA S +S+ P+P +PS+C+ +AP I SR
Sbjct: 282 RAGVQCSMTSTTAIPFPEIPSNCNVGIQMAPGVINSR 318
>AC024790-3|AAF60637.1| 446|Caenorhabditis elegans Hypothetical
protein Y47D7A.6 protein.
Length = 446
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = -3
Query: 466 TAPTFMVFPSIMRASNVVSPSSSGLPPYPTVPSHCSTSQTVAPCSIASRAELPLSITP 293
T P++ PS + S+ S P Y T PS T+ + + S + + P++ P
Sbjct: 306 TTPSYETTPSYLVQSHAASKKYPIAPTYETTPSSYDTTPSYSVPSYTAPKKYPVASPP 363
>U58752-8|AAB00670.1| 308|Caenorhabditis elegans C-type lectin
protein 52 protein.
Length = 308
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -3
Query: 418 VVSPSSSGLPPYP--TVPSHCSTSQT 347
+ S S+S +P +P T+PSHC + T
Sbjct: 146 ICSASASAMPTFPAVTIPSHCPSGYT 171
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 472 APTAPTF-MVFPSIMRASNVVSPSSSGLPPYPTVPSHCSTSQTVAPCS 332
+P++P F M P S SP+S P PS+ TS + +P S
Sbjct: 1576 SPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTS 1623
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 472 APTAPTF-MVFPSIMRASNVVSPSSSGLPPYPTVPSHCSTSQTVAPCS 332
+P++P F M P S SP+S P PS+ TS + +P S
Sbjct: 1583 SPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTS 1630
>AJ252168-1|CAB65731.1| 346|Caenorhabditis elegans T-box DNA
binding protein protein.
Length = 346
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 457 TFMVFPSIMRASNVVSPSSSGLPPYPTVPSH 365
T + PSIM V P+ + LP PTVP +
Sbjct: 307 TLQLNPSIMMLYQNVFPTGNSLPAAPTVPGN 337
>AF025468-3|AAF02176.1| 346|Caenorhabditis elegans Male abnormal
protein 9 protein.
Length = 346
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 457 TFMVFPSIMRASNVVSPSSSGLPPYPTVPSH 365
T + PSIM V P+ + LP PTVP +
Sbjct: 307 TLQLNPSIMMLYQNVFPTGNSLPAAPTVPGN 337
>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical protein
T14G10.2a protein.
Length = 1470
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 412 SPSSSGLPPYPTVPSHCSTSQTVAPCSIAS 323
SP+SSG + T+ S +TS AP + S
Sbjct: 1366 SPASSGCSSFSTIASIAATSMAAAPSAFVS 1395
>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 412 SPSSSGLPPYPTVPSHCSTSQTVAPCSIAS 323
SP+SSG + T+ S +TS AP + S
Sbjct: 1366 SPASSGCSSFSTIASIAATSMAAAPSAFVS 1395
>U56081-1|AAB37243.1| 346|Caenorhabditis elegans T-BOX 12 protein.
Length = 346
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 457 TFMVFPSIMRASNVVSPSSSGLPPYPTVPSH 365
T + PSIM V P+ + LP PTVP +
Sbjct: 307 TLQLNPSIMMLYQNVFPTGNSLPAGPTVPGN 337
>U20864-2|AAN65320.1| 174|Caenorhabditis elegans Hypothetical
protein F32A5.4b protein.
Length = 174
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 412 SPSSSGLPPYPTVPSHCS 359
S SS+ LPP PTVP C+
Sbjct: 154 STSSTTLPPKPTVPQFCT 171
>U20864-1|AAC46663.1| 243|Caenorhabditis elegans Hypothetical
protein F32A5.4a protein.
Length = 243
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 412 SPSSSGLPPYPTVPSHCS 359
S SS+ LPP PTVP C+
Sbjct: 223 STSSTTLPPKPTVPQFCT 240
>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
protein.
Length = 1347
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 412 SPSSSGLPPYPTVPSHCSTSQTVAPCSIAS 323
SP+SSG + T+ S +TS AP + S
Sbjct: 1243 SPASSGCSSFSTIASIAATSMAAAPSAFVS 1272
>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
protein.
Length = 1470
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 412 SPSSSGLPPYPTVPSHCSTSQTVAPCSIAS 323
SP+SSG + T+ S +TS AP + S
Sbjct: 1366 SPASSGCSSFSTIASIAATSMAAAPSAFVS 1395
>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
Length = 1470
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 412 SPSSSGLPPYPTVPSHCSTSQTVAPCSIAS 323
SP+SSG + T+ S +TS AP + S
Sbjct: 1366 SPASSGCSSFSTIASIAATSMAAAPSAFVS 1395
>Z92803-13|CAB07249.2| 331|Caenorhabditis elegans Hypothetical
protein K01G5.9 protein.
Length = 331
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 381 GYGGSPDEDGETTLDALIMDGKTMNVGAVGALRRI 485
G+G D E +A M K ++ GAVGA+ +
Sbjct: 50 GFGSHLTIDQEVECEASYMSSKNLSFGAVGAISNV 84
>AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical
protein Y43F8C.16 protein.
Length = 370
Score = 27.1 bits (57), Expect = 7.7
Identities = 21/59 (35%), Positives = 28/59 (47%)
Frame = -3
Query: 469 PTAPTFMVFPSIMRASNVVSPSSSGLPPYPTVPSHCSTSQTVAPCSIASRAELPLSITP 293
PT+ + + R S + S SS P TVPS +++ T P S S AE S TP
Sbjct: 269 PTSTMSTITLTSDRTSTITSTGSSNPPSTSTVPSTTTSTTTPKPSS-PSTAE--ASTTP 324
>AL021482-4|CAA16341.2| 331|Caenorhabditis elegans Hypothetical
protein K01G5.9 protein.
Length = 331
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 381 GYGGSPDEDGETTLDALIMDGKTMNVGAVGALRRI 485
G+G D E +A M K ++ GAVGA+ +
Sbjct: 50 GFGSHLTIDQEVECEASYMSSKNLSFGAVGAISNV 84
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,402,106
Number of Sequences: 27780
Number of extensions: 241969
Number of successful extensions: 859
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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