Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C03
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       27   1.8  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    26   3.1  
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    25   5.4  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   7.1  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   7.1  
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy...    25   7.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   7.1  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   9.4  

>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -2

Query: 171 PPASRQLTK--QPPLCQQKNIKQYYYCYKNVNY 79
           P  S+Q T   + P+ QQ+N++Q YY  +N NY
Sbjct: 650 PFQSQQATGYYKQPMQQQQNMQQPYYNQQNYNY 682


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 295 PPDGLTPPPHITLFSVIYEIPVP 227
           PP+G  PP  I L S I  +P P
Sbjct: 280 PPEGSPPPMPIELLSYIINMPPP 302


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 250 LKIMLYGVEVSDHQVDQLLLSPSFIPLSQS 339
           L +M      S  Q   LLL PS+IP++Q+
Sbjct: 143 LSLMNNAYNKSSAQQPNLLLQPSYIPMTQT 172


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 407 LWQS*FIIEHHVEGRIRFPLYCV 339
           +W   FII+ H E R  +P+Y V
Sbjct: 319 IWLFIFIIQPHKEERFMYPIYPV 341


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 263  YMGWRCQTIRWISSYYLHPLSHYLN 337
            Y+G + Q  R++S Y+ HP  H  N
Sbjct: 1337 YLGTQLQLDRFLSFYFAHPGFHLNN 1361


>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 299

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 181 FFRLLQQNY*LMIKNWAQGFHISLKIMLYGVEVSDHQVDQLLLS 312
           F RLLQ    L +     G H   K++   +EV DH++   LLS
Sbjct: 143 FDRLLQNECPLYVLPNIDGVHRGAKLLDKCLEVLDHRLYTYLLS 186


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 310 IVGADPPDGLTPPPHITLFSVIYEIPVPNS 221
           + GA PP    PPP ++     Y  P P +
Sbjct: 770 VAGAGPPPPPPPPPAVSAGGSRYYAPAPQA 799


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 165 ASRQLTKQPPLCQQKNIKQYYYCYKNVNYMFELLDSCTTN 46
           ASR++T         NI +YY   K+  +++ +++ C  N
Sbjct: 692 ASREITLLQQSDNHPNIVRYYCKQKSDQFLYIVIELCKCN 731


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,136,787
Number of Sequences: 5004
Number of extensions: 42142
Number of successful extensions: 106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)