Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C03
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0387 + 23038490-23038662,23039246-23039303,23039471-230395...    32   0.25 
01_06_1356 + 36627590-36627676,36627869-36628020,36628224-366284...    28   5.4  
03_02_0319 - 7421357-7421757,7421768-7421843,7424695-7424796,742...    27   7.2  

>11_06_0387 +
           23038490-23038662,23039246-23039303,23039471-23039551,
           23039640-23039675,23039821-23040060,23040155-23040293,
           23041417-23041889
          Length = 399

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 267 WGGGVRPSGGSAPTISILYPTISIHAIQREPYPALYMVLNY 389
           WGGG RPSGG    + +++  +S    Q   Y  LY  L +
Sbjct: 7   WGGGRRPSGGGGGVV-VMFAWLSSQERQVRAYVELYAALGW 46


>01_06_1356 +
           36627590-36627676,36627869-36628020,36628224-36628471,
           36628585-36628707,36628797-36629842
          Length = 551

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 228 GTGISYITENNVIWGGGVRPSGGSAPTISILY-PTISIHAIQREPYP 365
           GT I+ +  N+VI+    +  G   PTI +    T+ +HA+   PYP
Sbjct: 32  GTKITQLCMNSVIYTANQQLPG---PTIEVTEGDTLVVHAVNDSPYP 75


>03_02_0319 -
           7421357-7421757,7421768-7421843,7424695-7424796,
           7424911-7424982
          Length = 216

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 211 LMIKNWAQGFHISLKIMLYGVEVSDHQVDQL--LLSPSFIPLSQSTQYRGNL 360
           + +  WA+ FHI+ + ++Y    +  +   L   L P  +PL   + +RGN+
Sbjct: 67  ICLHRWAKDFHITSERLVYEARETKPKFSHLSASLCPLPVPLPFPSIFRGNI 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,928,191
Number of Sequences: 37544
Number of extensions: 296669
Number of successful extensions: 669
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)