Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C03
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68270-13|CAD21675.1|  225|Caenorhabditis elegans Hypothetical p...    39   0.002
Z68270-12|CAA92573.1|  205|Caenorhabditis elegans Hypothetical p...    39   0.002
Z68213-7|CAD21589.1|  225|Caenorhabditis elegans Hypothetical pr...    39   0.002
Z68213-6|CAA92442.1|  205|Caenorhabditis elegans Hypothetical pr...    39   0.002
AF202932-1|AAK69382.1|  225|Caenorhabditis elegans ICln2 protein.      39   0.002
AF202931-1|AAK69381.1|  205|Caenorhabditis elegans ICln1 protein.      39   0.002
AF098501-3|AAM69106.1|  275|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF098501-2|AAM69105.1|  298|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AC006804-5|AAF60754.1|  213|Caenorhabditis elegans Hypothetical ...    27   6.4  

>Z68270-13|CAD21675.1|  225|Caenorhabditis elegans Hypothetical
           protein C01F6.8b protein.
          Length = 225

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +3

Query: 171 EGVLLQTPSTKLLVNDQELGTGISYITENNVIWGGGVRPSGGSAPTISILYPTISIHAIQ 350
           EG+ L T + +       LG G  YIT++ VIW      + G     S+ YP I +HAI 
Sbjct: 11  EGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWISSAAGTKG----FSVAYPAIVLHAIS 66

Query: 351 RE 356
            +
Sbjct: 67  TD 68


>Z68270-12|CAA92573.1|  205|Caenorhabditis elegans Hypothetical
           protein C01F6.8a protein.
          Length = 205

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +3

Query: 171 EGVLLQTPSTKLLVNDQELGTGISYITENNVIWGGGVRPSGGSAPTISILYPTISIHAIQ 350
           EG+ L T + +       LG G  YIT++ VIW      + G     S+ YP I +HAI 
Sbjct: 11  EGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWISSAAGTKG----FSVAYPAIVLHAIS 66

Query: 351 RE 356
            +
Sbjct: 67  TD 68


>Z68213-7|CAD21589.1|  225|Caenorhabditis elegans Hypothetical
           protein C01F6.8b protein.
          Length = 225

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +3

Query: 171 EGVLLQTPSTKLLVNDQELGTGISYITENNVIWGGGVRPSGGSAPTISILYPTISIHAIQ 350
           EG+ L T + +       LG G  YIT++ VIW      + G     S+ YP I +HAI 
Sbjct: 11  EGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWISSAAGTKG----FSVAYPAIVLHAIS 66

Query: 351 RE 356
            +
Sbjct: 67  TD 68


>Z68213-6|CAA92442.1|  205|Caenorhabditis elegans Hypothetical
           protein C01F6.8a protein.
          Length = 205

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +3

Query: 171 EGVLLQTPSTKLLVNDQELGTGISYITENNVIWGGGVRPSGGSAPTISILYPTISIHAIQ 350
           EG+ L T + +       LG G  YIT++ VIW      + G     S+ YP I +HAI 
Sbjct: 11  EGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWISSAAGTKG----FSVAYPAIVLHAIS 66

Query: 351 RE 356
            +
Sbjct: 67  TD 68


>AF202932-1|AAK69382.1|  225|Caenorhabditis elegans ICln2 protein.
          Length = 225

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +3

Query: 171 EGVLLQTPSTKLLVNDQELGTGISYITENNVIWGGGVRPSGGSAPTISILYPTISIHAIQ 350
           EG+ L T + +       LG G  YIT++ VIW      + G     S+ YP I +HAI 
Sbjct: 11  EGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWISSAAGTKG----FSVAYPAIVLHAIS 66

Query: 351 RE 356
            +
Sbjct: 67  TD 68


>AF202931-1|AAK69381.1|  205|Caenorhabditis elegans ICln1 protein.
          Length = 205

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = +3

Query: 171 EGVLLQTPSTKLLVNDQELGTGISYITENNVIWGGGVRPSGGSAPTISILYPTISIHAIQ 350
           EG+ L T + +       LG G  YIT++ VIW      + G     S+ YP I +HAI 
Sbjct: 11  EGIKLATTNVQAFFKIDSLGNGTLYITDSAVIWISSAAGTKG----FSVAYPAIVLHAIS 66

Query: 351 RE 356
            +
Sbjct: 67  TD 68


>AF098501-3|AAM69106.1|  275|Caenorhabditis elegans Hypothetical
           protein H28G03.2c protein.
          Length = 275

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 307 VGADPPDGLTPPPHITLFSVIYEIPVPNS 221
           +G  PP    PPPHI L +  Y +P P S
Sbjct: 97  IGMPPPPLGMPPPHIGLGAAPYAVPPPMS 125


>AF098501-2|AAM69105.1|  298|Caenorhabditis elegans Hypothetical
           protein H28G03.2b protein.
          Length = 298

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 307 VGADPPDGLTPPPHITLFSVIYEIPVPNS 221
           +G  PP    PPPHI L +  Y +P P S
Sbjct: 120 IGMPPPPLGMPPPHIGLGAAPYAVPPPMS 148


>AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical
           protein H28G03.2a protein.
          Length = 548

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 307 VGADPPDGLTPPPHITLFSVIYEIPVPNS 221
           +G  PP    PPPHI L +  Y +P P S
Sbjct: 370 IGMPPPPLGMPPPHIGLGAAPYAVPPPMS 398


>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical
           protein T16G12.1 protein.
          Length = 1890

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 265 ITLFSVIYEIPVPNS*SLTSNFVEG 191
           I LFS+I   P PN+  L S F EG
Sbjct: 12  IGLFSLISTAPAPNNVGLESEFTEG 36


>AC006804-5|AAF60754.1|  213|Caenorhabditis elegans Hypothetical
           protein Y53G8B.1 protein.
          Length = 213

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 312 SILYPTISIHAIQREPYPALYMVLNYELGLPEFPI 416
           SI+Y  I  + +   PYP +  + N    LPEF +
Sbjct: 167 SIVYNAIEKYHVDMTPYPIITRISNKLAELPEFQV 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,778,980
Number of Sequences: 27780
Number of extensions: 241568
Number of successful extensions: 657
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)