Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C02
         (447 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    27   1.3  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    25   4.0  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   5.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   5.3  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    24   9.3  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    24   9.3  

>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 296 LSNFGNIGNCSYESANF*G-QIFYRLFRLEV-HCVNF 400
           L NFGNIGN S  + N+ G +I    +  EV +C+ F
Sbjct: 118 LRNFGNIGNSSLYTENYSGTKILIEEYVREVNNCLEF 154


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 217 CAQLVLCAF*ITASHRYILNDQRDIGI 137
           CAQL+L A  I+   +YI  +Q  +G+
Sbjct: 166 CAQLLLAAVSISTDLKYIPTNQHIVGV 192


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 9   HLSDIHVGVLMRAGGILADNSSGETENLHFVSRR 110
           HL   H+  +   GG+    SS   +NL F SR+
Sbjct: 455 HLERYHLHAVAAMGGLYQIMSSTHLKNLFFCSRK 488


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 244  RKTVRLMLHCAQ-LVLCAF*ITASHRYILNDQRDI 143
            RK+ ++   CA  L+L A+    S   +LND RD+
Sbjct: 1641 RKSYKMNSSCADILLLAAYKWNVSRPSLLNDNRDV 1675


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -1

Query: 180 QATGIYLTISGI*VYIT*LDYFINVCLR-NEGFLFHH--LNYLRGSRR-LSSGHQHVCLI 13
           QA G    I  + + +T +  F   C + N G    +  L+ +R  +R +  GH+++CLI
Sbjct: 602 QAKGYRHVIEDLQLMLTTITGFDAACFQPNSGAAGEYTGLSVIRAYQRSIGQGHRNICLI 661

Query: 12  SAS 4
             S
Sbjct: 662 PVS 664


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 267 QRTLNIYKMLLVILGTLVIAVTSL 338
           +  LN+Y  L ++LG+L +++T +
Sbjct: 406 KNALNVYSDLWILLGSLHLSITKI 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,919,779
Number of Sequences: 5004
Number of extensions: 38732
Number of successful extensions: 74
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)