Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C02
         (447 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859...    31   0.32 
11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576...    29   1.7  
04_04_0820 - 28342925-28343092,28343194-28343232,28343664-283437...    29   2.3  
02_01_0046 - 311752-312138,312220-312372,312458-312653,312702-31...    27   5.2  
05_04_0137 + 18343106-18344686                                         27   6.9  

>11_06_0561 -
           24984960-24985205,24985283-24985354,24985906-24985977,
           24986612-24986782,24987464-24987653,24987733-24987976,
           24988162-24988474,24988687-24989517,24989628-24989672,
           24989677-24989790,24989877-24990371,24990627-24990824,
           24990902-24991357
          Length = 1148

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = -3

Query: 361 KNLSSEIGRLVTAITNVP---KITKSIL*IFNVRCTLLSNCVRKTVRLMLHCAQLVLCAF 191
           KN   E  R +  +TN+     I+K+++ + + RC ++++ +R+  +    CA   LCAF
Sbjct: 337 KNTDLESIRYICFLTNIMDNLNISKAMVTMSSGRCGIINSIIRRNEKCKKTCACAELCAF 396

Query: 190 *ITAS 176
            I  S
Sbjct: 397 GIEDS 401


>11_06_0557 -
           24955837-24956214,24957225-24957395,24957576-24957635,
           24958419-24958623,24958710-24958953,24959103-24959394,
           24959734-24960828,24960915-24961409,24961665-24961823,
           24961893-24962387
          Length = 1197

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = -3

Query: 361 KNLSSEIGRLVTAITNVP---KITKSIL*IFNVRCTLLSNCVRKTVRLMLHCAQLVLCAF 191
           K    E  R +  +TN+     I+K+++ + + RC ++++ +R+  +    CA   LCAF
Sbjct: 337 KKTDLESIRYICFLTNIVDNLNISKAMVTMSSGRCGIINSIIRRNEKCKKTCACAELCAF 396

Query: 190 *ITAS 176
            I  S
Sbjct: 397 GIEDS 401


>04_04_0820 -
           28342925-28343092,28343194-28343232,28343664-28343729,
           28343847-28343918,28344008-28344127,28344207-28344752
          Length = 336

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 92  SFRKQTLIK*SN*VIYTYIPLIVKYIPVACGYLKG 196
           SFR+  +    N   Y   P + + +PVAC YLKG
Sbjct: 17  SFRESLVSLLDNTRDYVMAPEVFEGVPVACDYLKG 51


>02_01_0046 -
           311752-312138,312220-312372,312458-312653,312702-312792,
           312808-313228
          Length = 415

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -3

Query: 334 LVTAIT-NVPKITKSIL*IFNVRCTLLSNCVRKTVRLMLHCAQLVLCAF 191
           L  A+T  + ++T ++   +   C+LLS+ VR ++R    C QL  CAF
Sbjct: 78  LEVAVTPGIEELTLTLHKKYIFACSLLSDGVRDSIR----CLQLTFCAF 122


>05_04_0137 + 18343106-18344686
          Length = 526

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 230 PYGFPHTVTKKCTTNIEYL*NALSNFGN-IGNCSYESA 340
           P+G  H VT  C   +E+L     NFGN +   S+ +A
Sbjct: 79  PFGAGHAVTTACPAAVEHL--LRGNFGNYVRGASFRAA 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,756,678
Number of Sequences: 37544
Number of extensions: 219322
Number of successful extensions: 371
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)