Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C02
         (447 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47070-1|CAA87340.1|  516|Caenorhabditis elegans Hypothetical pr...    30   0.88 
U61953-2|AAC48081.1|  356|Caenorhabditis elegans Seven tm recept...    27   4.7  
Z92829-13|CAB07344.2|  337|Caenorhabditis elegans Hypothetical p...    27   6.2  
Z49067-1|CAA88849.2|  376|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U58753-8|AAC24439.1|  633|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U58753-7|AAC24433.1|  581|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z47070-1|CAA87340.1|  516|Caenorhabditis elegans Hypothetical
           protein T09B9.2 protein.
          Length = 516

 Score = 29.9 bits (64), Expect = 0.88
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = -1

Query: 393 TQWTSNRNSL*KICPQKLADS*LQLPMFPKLLRAFYKYSMFVVHFL 256
           T+W SNR S+ K   QK  DS          ++A  KYSMF+ H L
Sbjct: 470 TEWASNRVSVPKDADQKSNDSGSST---SSTIQAIAKYSMFLSHDL 512


>U61953-2|AAC48081.1|  356|Caenorhabditis elegans Seven tm receptor
           protein 185 protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 131 VIYTYIPLIVKYIPVA 178
           V+ T+IPLI+ YIP+A
Sbjct: 259 VVQTFIPLILMYIPIA 274


>Z92829-13|CAB07344.2|  337|Caenorhabditis elegans Hypothetical
           protein F10A3.6 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 131 VIYTYIPLIVKYIPVACGYL 190
           VI T IP +  YIPV+C +L
Sbjct: 253 VIQTLIPSVFMYIPVSCMFL 272


>Z49067-1|CAA88849.2|  376|Caenorhabditis elegans Hypothetical
           protein C44F1.2 protein.
          Length = 376

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 146 IPLIVKYIPVACGYLKG 196
           +PL    +PV CGY+KG
Sbjct: 69  VPLNATTVPVTCGYVKG 85


>U58753-8|AAC24439.1|  633|Caenorhabditis elegans Hypothetical
           protein W03B1.9 protein.
          Length = 633

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 236 GFPHTVTKKCTTNIEYL*NALSNFGNIGN 322
           GFP T+T+ C T I    N L +  ++ N
Sbjct: 164 GFPQTLTRVCLTGIYLTENLLDHLASLKN 192


>U58753-7|AAC24433.1|  581|Caenorhabditis elegans Hypothetical
           protein W03B1.5 protein.
          Length = 581

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 236 GFPHTVTKKCTTNIEYL*NALSNFGNIGN 322
           GFP T+T+ C T I    N L +  ++ N
Sbjct: 112 GFPQTLTRVCLTGIYLTENLLDHLASLKN 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,595,351
Number of Sequences: 27780
Number of extensions: 214093
Number of successful extensions: 493
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)