Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_C01
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...   111   5e-26
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac...    26   2.5  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    26   3.4  
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    25   4.5  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   7.8  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score =  111 bits (267), Expect = 5e-26
 Identities = 50/109 (45%), Positives = 75/109 (68%), Gaps = 2/109 (1%)
 Frame = +1

Query: 145 KESKDPFDSMPKGSFNMDDFKRFYSNEE-EAKSIPYFWEKFDPEHYSIWYCQYKYPEELA 321
           K  K P  S P GSF+++++KR YSN++  + ++P+F+E FDPE+YS+W   Y YPE+L 
Sbjct: 249 KPPKHPLASAPNGSFDIEEYKRVYSNQDTRSGALPWFFEHFDPENYSVWKVDYSYPEDLK 308

Query: 322 K-VFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSTISGVWVWRGHE 465
           + VFM+ NLI G FQRL+  RK  F    + G + D+TI+G +V +GH+
Sbjct: 309 QPVFMTNNLIGGFFQRLEASRKYIFGCCVVIGENGDNTITGAFVIKGHD 357


>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
           Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -3

Query: 446 HTPEMVESLSP---PKRQTEAKACLRILSRRWNMPVIRL 339
           H P  V+ L+    P    E   CL IL + WN PV+ L
Sbjct: 82  HDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWN-PVLNL 119


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 155 KTRLTRCQRGLSIWMTSSVSILTKRRRNRFLTSG 256
           K  +   +RG+SI    +VS +   RRNR L  G
Sbjct: 150 KLTVVNAERGISIHKDKNVSDIFIMRRNRLLCCG 183


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 458 PRQTHTPEMVESLSPPKRQTEAKACLRILSRRWNMPVIRLQLMNTLASSSGYL 300
           PR  HT  + E++       +A+A LRIL RR       L+  +   + + YL
Sbjct: 397 PRPEHTGSVKEAIDLWHSTHDAEASLRILPRRMIAESSILETWSRSGNQTDYL 449


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 157 DPFDSMPKGSFNM-DDFKRFYSNEEEAKSIPYFWEKF 264
           +P  S P  S  + D  +  Y ++++ +    FWEKF
Sbjct: 32  EPLKSTPINSLELLDIIQAVYDDQKKGEESFVFWEKF 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,554,867
Number of Sequences: 5004
Number of extensions: 26723
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)