Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_C01
(475 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 95 2e-20
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 81 3e-16
02_01_0567 - 4168164-4168250,4168672-4168828,4168951-4169090,417... 28 4.4
06_03_1310 + 29238644-29240260 27 5.8
03_03_0113 + 14550435-14550822,14550831-14551660,14552105-145522... 27 5.8
01_05_0490 + 22672241-22674679 27 5.8
12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222... 27 7.7
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 95.5 bits (227), Expect = 2e-20
Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Frame = +1
Query: 154 KDPFDSMPKGSFNMDDFKRFYSNEE---EAKSIPYFWEKFDPEHYSIWYCQYKYPEELAK 324
K+P D +P +D++KR YSN + +I FW+ +DPE YS+W+C YKY +E
Sbjct: 264 KNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTV 323
Query: 325 VFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSTISGVWVWRGHEL 468
F++ N + G QR+D RK AF + + G + + G+W++RG E+
Sbjct: 324 SFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEI 371
Score = 95.5 bits (227), Expect = 2e-20
Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Frame = +1
Query: 154 KDPFDSMPKGSFNMDDFKRFYSNEE---EAKSIPYFWEKFDPEHYSIWYCQYKYPEELAK 324
K+P D +P +D++KR YSN + +I FW+ +DPE YS+W+C YKY +E
Sbjct: 829 KNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTV 888
Query: 325 VFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSTISGVWVWRGHEL 468
F++ N + G QR+D RK AF + + G + + G+W++RG E+
Sbjct: 889 SFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEI 936
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 81.4 bits (192), Expect = 3e-16
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Frame = +1
Query: 154 KDPFDSMPKGSFNMDDFKRFYSNEE---EAKSIPYFWEKFDPEHYSIWYCQYKYPEELAK 324
K+P D +P +D++KR YSN + +I FW+ +DPE YS+W+C YKY +E
Sbjct: 281 KNPLDLLPPSKMILDEWKRLYSNTKTNFREIAIKGFWDMYDPEGYSLWFCDYKYNDENTV 340
Query: 325 VFMSCNLITGMFQRLDKMRKQAFASVCLFGGDNDSTISGVWVWRGHEL 468
F++ N +R+D RK AF + + G + G+W++RG ++
Sbjct: 341 SFVTMN------KRMDLCRKYAFGKMLVIGSTPPFKVKGLWLFRGQDI 382
>02_01_0567 -
4168164-4168250,4168672-4168828,4168951-4169090,
4170318-4170456,4170562-4170830,4170914-4171000,
4171259-4171327,4171427-4171455,4171544-4171950,
4172906-4172977,4173150-4173221,4173299-4173370,
4173454-4173519,4173717-4173785,4173866-4173995,
4174846-4174975
Length = 664
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 319 PAPPGTCTGSTRWSSARDQTSPRSKESISPPLR 221
P+P + + S+ S+ARD +SP S++ S LR
Sbjct: 242 PSPSSSPSNSSGGSTARDSSSPSSRKHKSSTLR 274
>06_03_1310 + 29238644-29240260
Length = 538
Score = 27.5 bits (58), Expect = 5.8
Identities = 21/66 (31%), Positives = 26/66 (39%)
Frame = -1
Query: 319 PAPPGTCTGSTRWSSARDQTSPRSKESISPPLR*NRNA*SHPY*KTPLASSQTGLWTPWV 140
P PP T + S + SS TSP S SPP + HP P + TP
Sbjct: 410 PPPPPTYSESPK-SSMPPSTSPPSSHGASPPSSSSSPPTEHPGYVLPPLTPPPPTTTPPG 468
Query: 139 SHQTLP 122
H +P
Sbjct: 469 HHAPVP 474
>03_03_0113 +
14550435-14550822,14550831-14551660,14552105-14552278,
14552350-14552517
Length = 519
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -3
Query: 464 SWPRQTHTPEMVESLSPPKRQTEAKACLRILSRRWNMPVIRLQLMNT 324
+W R T PE + P R AK ++I + R ++R +L +
Sbjct: 36 AWRRLTSRPEFYRAYVPRPRPVAAKVTVKINTTRAADTIVRFELFRS 82
>01_05_0490 + 22672241-22674679
Length = 812
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Frame = -1
Query: 328 TLWPAPPGTCTGSTRWSSAR-----DQTSPRSKESISPPLR*NR 212
T P PP T S RW+S R DQ + + ++ PPL +R
Sbjct: 335 TTMPPPPPPLTRSRRWNSERLDAVLDQVARVDETAMPPPLTRSR 378
>12_02_0932 +
24519204-24519380,24520074-24520128,24520251-24522202,
24522288-24522446,24522878-24523049,24523131-24523429,
24524037-24524285
Length = 1020
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 348 DQVTAHEHFGQLLRVLVLAVPDGVVLGIKL 259
D + EHF + ++V+AVP+G+ L + L
Sbjct: 393 DALEMLEHFAIAVTIVVVAVPEGLPLAVTL 422
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,053,370
Number of Sequences: 37544
Number of extensions: 201218
Number of successful extensions: 752
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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