Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_B24
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 249 1e-66
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 248 2e-66
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 247 4e-66
01_01_1101 + 8731427-8732938 29 1.9
01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759 29 3.4
03_02_0539 - 9329572-9330729,9330988-9331041 28 4.5
10_08_0510 + 18430580-18431781,18433176-18433554 28 5.9
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 28 5.9
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 5.9
04_04_0950 + 29609484-29611025 27 7.8
03_05_0057 + 20350971-20351405 27 7.8
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 249 bits (609), Expect = 1e-66
Identities = 112/160 (70%), Positives = 131/160 (81%)
Frame = +1
Query: 34 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 213
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 214 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKY 393
+ I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+
Sbjct: 78 ISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKF 137
Query: 394 KLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQ 513
KLCKVR V G K +P+L T+DGRT+RYPDPLI ND+++
Sbjct: 138 KLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIK 177
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +2
Query: 512 KLDISTNKIMDFIKFDSG 565
K+D+ TNKI+DFIKFD G
Sbjct: 177 KIDLETNKIVDFIKFDVG 194
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 248 bits (607), Expect = 2e-66
Identities = 110/161 (68%), Positives = 132/161 (81%)
Frame = +1
Query: 31 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 210
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 211 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 390
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 391 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQ 513
+KLCKVR V G K +PYL T+DGRT+RYPDPLI ND+++
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIK 161
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +2
Query: 512 KLDISTNKIMDFIKFDSG 565
K+D+ TNKI+DFIKFD G
Sbjct: 161 KIDLETNKIVDFIKFDVG 178
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 247 bits (605), Expect = 4e-66
Identities = 109/161 (67%), Positives = 132/161 (81%)
Frame = +1
Query: 31 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 210
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 211 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 390
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 391 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVQ 513
+KLCKVR V G K +PYL T+DGRT+RYPDP+I ND+++
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIK 161
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +2
Query: 512 KLDISTNKIMDFIKFDSG 565
K+D+ TNKI+DFIKFD G
Sbjct: 161 KIDLETNKIVDFIKFDVG 178
>01_01_1101 + 8731427-8732938
Length = 503
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -2
Query: 216 KHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAAQLVQ--HP 82
+HL+ L P H R A A L+ + R P R HAA LV+ HP
Sbjct: 29 RHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRVHP 75
>01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759
Length = 428
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 399 VQGAARRDRPQERAVPGDARRAHAPVPG 482
++GA RR R E+A+P + AP PG
Sbjct: 4 LRGAKRRKRQPEKALPAAGQAMPAPAPG 31
>03_02_0539 - 9329572-9330729,9330988-9331041
Length = 403
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 384 SQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQCER 503
S A AA++ RP A AR A AP P PA +C R
Sbjct: 58 SSASAAAAAAQQARPNSMAER--ARLARAPQPEPALKCPR 95
>10_08_0510 + 18430580-18431781,18433176-18433554
Length = 526
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 512 CTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 390
CTE+ + R ++P +T YGTLL AT+ L ++
Sbjct: 202 CTEARKIFDSMTKRGLKPD-ITTYGTLLQGYATKGALVEMH 241
>10_08_0509 +
18419815-18422150,18422249-18422291,18423154-18423487,
18423766-18423878,18424461-18424589,18424771-18424864,
18424967-18425050,18425859-18426047,18426897-18427017,
18427476-18427692
Length = 1219
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 512 CTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 390
CTE+ + R ++P +T YGTLL AT+ L ++
Sbjct: 320 CTEARKMFDSMTKRGLKPE-ITTYGTLLQGYATKGALVEMH 359
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 325 FRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGP 429
+ LIYD++G + + P++A L + V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>04_04_0950 + 29609484-29611025
Length = 513
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 230 CFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 102
CF + + V+ + R +RK + K + L GP +G Y P
Sbjct: 468 CFLAVLVAFAVAWAVRRRQRKAAAEKPADGLLGPTKGSALYDP 510
>03_05_0057 + 20350971-20351405
Length = 144
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +3
Query: 393 QAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQCERLG 509
Q Q AAR D P R + AP PG A RLG
Sbjct: 29 QPPQAAARPDEAPHHRQPAPDRPSAAPEPGGAGGVARLG 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,597,901
Number of Sequences: 37544
Number of extensions: 367697
Number of successful extensions: 1201
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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