Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_B23
(483 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical pr... 155 1e-38
AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal pro... 155 1e-38
Z83217-2|CAB05680.2| 319|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z81586-4|CAB04688.2| 366|Caenorhabditis elegans Hypothetical pr... 29 2.3
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 28 3.1
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 28 3.1
Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical pr... 27 9.4
U23180-2|AAC46726.3| 249|Caenorhabditis elegans Hypothetical pr... 27 9.4
>Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical
protein T05F1.3 protein.
Length = 146
Score = 155 bits (377), Expect = 1e-38
Identities = 76/144 (52%), Positives = 99/144 (68%), Gaps = 1/144 (0%)
Frame = +2
Query: 23 RSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAIL 202
R+ ++KDV+Q + K++A LKK GKVKVP+ DLVK KELAP DPDWFY R A++
Sbjct: 3 RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62
Query: 203 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDG-G 379
RH+Y R P G+ K++GG KR GV P+HF S+G+ RKA+Q LE +K VEK DG G
Sbjct: 63 RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121
Query: 380 RILTTHVRRDLDRIAAQVRLKAKQ 451
RIL+ R+DLDRIA +R +Q
Sbjct: 122 RILSKQGRKDLDRIATSLRSSGQQ 145
>AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal
protein S19 protein.
Length = 146
Score = 155 bits (377), Expect = 1e-38
Identities = 76/144 (52%), Positives = 99/144 (68%), Gaps = 1/144 (0%)
Frame = +2
Query: 23 RSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAIL 202
R+ ++KDV+Q + K++A LKK GKVKVP+ DLVK KELAP DPDWFY R A++
Sbjct: 3 RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62
Query: 203 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDG-G 379
RH+Y R P G+ K++GG KR GV P+HF S+G+ RKA+Q LE +K VEK DG G
Sbjct: 63 RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121
Query: 380 RILTTHVRRDLDRIAAQVRLKAKQ 451
RIL+ R+DLDRIA +R +Q
Sbjct: 122 RILSKQGRKDLDRIATSLRSSGQQ 145
>Z83217-2|CAB05680.2| 319|Caenorhabditis elegans Hypothetical
protein C10C6.3 protein.
Length = 319
Score = 29.1 bits (62), Expect = 1.8
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +2
Query: 215 IRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGGRILTT 394
I S + K T ++ G R G P SGS +K A+K EK +D GR L
Sbjct: 141 IESDLKEKPDTNVYTG-SREGYVPPPAKEGSGSGGKKKDMNNVAVKPDEKKKDSGRKLKK 199
Query: 395 HVRRDLDRIA---AQVRLKAKQQATQQ 466
V + + +++ ++ + + K ATQ+
Sbjct: 200 TVSKTITKLSVSESKKKTEKKIAATQK 226
>Z81586-4|CAB04688.2| 366|Caenorhabditis elegans Hypothetical
protein T05F1.5 protein.
Length = 366
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -2
Query: 194 QHSVHKTNQGHREPVP*N--ELSLPSPYDLEPSLCRSFSSER 75
QH+ NQGHR P P + +LS P P + SL S R
Sbjct: 82 QHNRVGNNQGHRSPSPTSSPQLSSPPPSTMVDSLSTHSESSR 123
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 64 QNCS-RSLEKDRQSEGSRSYGLGKDSSFQGT 153
+NCS + E+DR S G SYG + F GT
Sbjct: 159 ENCSAKDEERDRDSGGVSSYGNKRSDEFCGT 189
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 64 QNCS-RSLEKDRQSEGSRSYGLGKDSSFQGT 153
+NCS + E+DR S G SYG + F GT
Sbjct: 159 ENCSAKDEERDRDSGGVSSYGNKRSDEFCGT 189
>Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical
protein T21E8.2 protein.
Length = 1263
Score = 26.6 bits (56), Expect = 9.4
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 5 EAQGKMRSVTVKDVEQDKIVKTVAAHLKKIGK 100
EA MR+V ++E DKI+ ++ HL+KI K
Sbjct: 881 EALENMRTVRALNLE-DKIMSLISEHLQKIHK 911
>U23180-2|AAC46726.3| 249|Caenorhabditis elegans Hypothetical
protein C28F5.2 protein.
Length = 249
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -1
Query: 345 ASRAWRALRAILPDDLQ 295
ASRAWR L AIL D+L+
Sbjct: 185 ASRAWRTLIAILIDELR 201
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,024,491
Number of Sequences: 27780
Number of extensions: 217529
Number of successful extensions: 669
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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