Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_B22
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 40 0.002
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 39 0.003
03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583... 36 0.019
05_05_0136 - 22631260-22631325,22631735-22631821,22631898-226320... 35 0.043
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341... 33 0.13
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199... 31 0.94
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458... 28 5.0
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +3
Query: 96 LPTANTCISRLYIPLYSSRHVLKHKLLLAIKTKNFGF 206
LP+A+TC ++L +P YSS+ L+ +LLLAI + GF
Sbjct: 3599 LPSAHTCFNQLDLPEYSSKEQLEERLLLAIHEASEGF 3635
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +3
Query: 12 TGSPALPASE-EGFQPMPSVTIRPAD---DAHLPTANTCISRLYIPLYSSRHVLKHKLLL 179
TG+P LP P +V + D D LP+ NTC +P YSS+ +++ KL
Sbjct: 1250 TGAPQLPLGGLASLDPKLTVVRKQCDGKVDNELPSVNTCRHFFKLPPYSSKEIMRQKLKY 1309
Query: 180 AIK 188
AIK
Sbjct: 1310 AIK 1312
>03_05_0712 - 27057858-27057941,27058093-27058182,27058268-27058384,
27059759-27059866,27060314-27060406,27060499-27060669,
27061505-27061757,27061860-27062138,27062939-27063273,
27063364-27064332,27064711-27065182,27065243-27065291,
27066564-27066804,27067606-27067695,27068172-27068294,
27068365-27068418
Length = 1175
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +3
Query: 69 TIRPADDAHLPTANTCISRLYIPLYSSRHVLKHKLLLAIKTKNFGF 206
TI D LP+A+TC + L +P Y L+ KLL AI + N GF
Sbjct: 1128 TIGGQDVDRLPSASTCYNTLKLPTYKRSSTLRSKLLYAI-SSNTGF 1172
>05_05_0136 - 22631260-22631325,22631735-22631821,22631898-22632026,
22632122-22632190,22632271-22632351,22632598-22632702,
22632786-22633016,22633098-22634272,22634391-22634457,
22636705-22637778,22638119-22638274,22638827-22638985,
22639062-22639220,22639306-22639422,22639502-22639612,
22639690-22640358
Length = 1484
Score = 35.1 bits (77), Expect = 0.043
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Frame = +3
Query: 12 TGSPALPASEEGFQPM-PSVTI-------RPADDAHLPTANTCISRLYIPLYSSRHVLKH 167
TGSP LP G + P +T+ ADD LP+ TC + L +P YSS+ ++
Sbjct: 1412 TGSPRLPPG--GLAALNPKLTVVRKQHNSNEADD-DLPSVMTCANYLKLPPYSSKDKMRE 1468
Query: 168 KLLLAI 185
KLL AI
Sbjct: 1469 KLLYAI 1474
>05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,
3413770-3413881,3414309-3414489,3414714-3414896,
3415133-3415315,3416062-3416131,3416413-3416522,
3416604-3416908,3417079-3417175,3417622-3417765,
3418217-3418303,3418387-3418473,3418566-3418706,
3418805-3418930,3419166-3419264,3419690-3419757,
3420275-3420341,3420713-3420883,3420959-3421048,
3421831-3421911,3423397-3423470,3423784-3423855,
3423925-3424017,3424138-3424204
Length = 1030
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +3
Query: 84 DDAHLPTANTCISRLYIPLYSSRHVLKHKLLLAIKTK 194
D+ LPT+ TC++ L +P Y ++ L+ KLL AI +
Sbjct: 988 DEDRLPTSATCMNLLKLPPYRNKTQLESKLLYAINAE 1024
>09_04_0560 -
18519024-18519145,18519330-18519435,18519671-18519907,
18521371-18521810,18523215-18525012
Length = 900
Score = 30.7 bits (66), Expect = 0.94
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 9 WTGSPALPASEEGFQPMPSVTIRPADDA-HLPTANTCISRLYIPLYSSRHVLKHKL 173
WT LP+ G + ++ A LP+++TC RL +P Y S V +++L
Sbjct: 763 WTSVKYLPSDGFGGLASKLYIYKVSESADRLPSSHTCFYRLCLPAYPSLKVTRNQL 818
>11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,
4584344-4584465,4584547-4584654,4585975-4586119,
4586786-4586869,4586997-4587345,4587527-4587666,
4587784-4588037,4588409-4588576,4588686-4588976,
4589329-4589538,4589778-4589860,4590288-4590414,
4593624-4595516,4596274-4596395,4596487-4596628,
4596719-4596940,4597489-4597563,4598351-4598452,
4598616-4598819
Length = 1730
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 76 DQQTMRTCPPLTRVFRGSIYRCTLRVMCSNINYC*PSKLRTL 201
+ TM PPL +FRG + RC + + +Y PS+ R L
Sbjct: 914 EDSTMDKIPPLA-LFRGDLKRCCESMQVALASYLVPSEARGL 954
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,228,057
Number of Sequences: 37544
Number of extensions: 300831
Number of successful extensions: 572
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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