Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_B20
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.3  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    26   2.2  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   2.9  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    25   3.9  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   3.9  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    25   3.9  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   5.1  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    24   6.8  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   6.8  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    24   9.0  

>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 291 ELGWKWDFVINL 326
           +LGW+WDF IN+
Sbjct: 260 KLGWRWDFWINM 271


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 177 IVFYRDSLVSYQHEYKNNGQLCIEHLSIYVLVVERDHSTSKEILF 43
           +V Y DS     +   N G     H+S+  LV+ R  STS +I +
Sbjct: 355 VVIYCDSFSDSDYISFNFGSDADFHVSVNDLVIYRQESTSGDICY 399


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 219  KRFSTICGGASLLKMLLSAMKDVFELGWK 305
            K    + GG    K LLS  ++ FE GWK
Sbjct: 1091 KNNQPVRGGLLFRKYLLSRCQEDFERGWK 1119


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -1

Query: 340 KSLSLKLITKSHFQPNSKTS--FIAESNILSKDAPPQIVENLL 218
           K+LS  ++++  +  +SK S      SN+++ +AP  +  NLL
Sbjct: 730 KNLSQSIVSRGLWSIDSKESKNMHISSNVVASEAPDALAANLL 772


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 2   HEASCRIRHEGKSQNSISFDVEWSRSTTST 91
           H AS  I H G+   S  F VE  +   +T
Sbjct: 563 HSASSSISHNGRLSTSTMFSVEGLKEAATT 592


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 124 WSTLYRTFINLCTCRRARPFNVKRN 50
           WS L  T +    CR  RP  +++N
Sbjct: 33  WSVLEETLLLKAICRGLRPVGIEKN 57


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 73  ALYDKYID**MFYTELTIIFIFMLIRDKTISIENYCY 183
           A++DKY++   +Y+E  I  IF    D  +  E   Y
Sbjct: 272 AVFDKYVERECYYSENAISKIFQNYPDLAVLFEELQY 308


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 325 KLITKSHFQPNSKTSFIAESNILSK 251
           K +T  HF   ++++F+A  NIL++
Sbjct: 203 KYLTDKHFVGQNRSTFLATLNILAQ 227


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 258 KMLLSAMKDVFELGWKWDFVIN 323
           K L++ + D+++L W+ D V+N
Sbjct: 147 KKLITRVLDMYQLHWQRDLVLN 168


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 165 RDSLVSYQHEYKNNGQLCIEHLSIYVLVVERDHSTSKEIL 46
           RD++++ +   + + QLCIE  S +     RD      IL
Sbjct: 524 RDNVINLRKMVEQDEQLCIETFSKFDFYATRDCELPLRIL 563


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,489,657
Number of Sequences: 5004
Number of extensions: 26503
Number of successful extensions: 82
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)