Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_B20
(376 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0678 + 23459752-23460379,23460993-23461068,23461146-234612... 40 5e-04
10_08_0134 + 15107411-15107939,15108049-15108124,15108332-151084... 39 0.001
08_01_0296 + 2383578-2384220,2384754-2384829,2384942-2385057,238... 38 0.003
01_01_0711 + 5506632-5507328,5507410-5507485,5507544-5508234 33 0.097
04_03_0254 - 13546324-13546814,13547211-13547279,13547542-135476... 31 0.22
05_07_0279 + 28917281-28917400,28917535-28917617,28918171-289183... 30 0.52
01_06_0871 - 32604968-32605470,32605546-32605722,32605821-32606355 29 0.90
03_05_0757 + 27478425-27479016,27479202-27479277,27479366-274794... 29 1.2
12_02_1271 + 27472457-27473030,27473122-27473197,27473277-274733... 29 1.6
01_01_0135 + 1231687-1232188,1234489-1234564,1234646-1234743,123... 29 1.6
11_06_0128 - 20389375-20389781,20389988-20392787 27 4.8
05_01_0469 - 3725117-3725170,3725282-3725356,3726938-3727015,372... 27 4.8
03_01_0317 + 2492030-2492591,2493189-2493249,2493951-2494066,249... 27 4.8
08_01_0149 - 1176386-1177055,1177149-1177699 27 6.3
05_03_0118 - 8586731-8587220,8587331-8587846,8588842-8588906,858... 27 6.3
12_01_0952 - 9479462-9479584,9479626-9479709 26 8.4
11_06_0048 - 19614636-19616076,19618621-19618992,19619057-19619451 26 8.4
05_01_0378 + 2970528-2971008,2971961-2972036,2972108-2972253,297... 26 8.4
03_05_0350 + 23368111-23368219,23368519-23368526,23368650-233686... 26 8.4
>06_03_0678 +
23459752-23460379,23460993-23461068,23461146-23461261,
23462425-23462939
Length = 444
Score = 40.3 bits (90), Expect = 5e-04
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Frame = +3
Query: 42 RIVFLLTLNGRALRQVHRLINVLYRVDHYFYIHVDKRQDYLYRXXXXXX-------XXFP 200
RI +L++ + + R + LY + + +H+D R F
Sbjct: 97 RIAYLVSGSAGDGAALRRTLRALYHPSNMYVVHLDLEAPATERAELAAAVRADPVYSRFR 156
Query: 201 NITLATKRFSTICGGASLLKMLLSAMKDVFELGWKWDFVINLSESDLPIKSLDNL 365
N+ + T+ G +++ L A + G +WD+ INLS SD P+ + D+L
Sbjct: 157 NVKVVTRANLVTYRGPTMVANTLHAAAILLREGGEWDWFINLSASDYPLVTQDDL 211
>10_08_0134 +
15107411-15107939,15108049-15108124,15108332-15108459,
15108960-15109037,15109734-15110263
Length = 446
Score = 38.7 bits (86), Expect = 0.001
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 7/116 (6%)
Frame = +3
Query: 39 VRIVFLLTLNGRALRQVHRLINVLYRVDHYFYIHVDKRQDYL-YRXXXXXXXXFP----- 200
V +L++ + + RL+ LY + + +H+D+ +R P
Sbjct: 63 VSFAYLISASTGDAARAARLLAALYHPANCYLLHLDREAPAEEHRRLAELVSGQPVYARA 122
Query: 201 -NITLATKRFSTICGGASLLKMLLSAMKDVFELGWKWDFVINLSESDLPIKSLDNL 365
N+ + + G ++L L A+ + LG +WD+ +NLS SD P+ + D+L
Sbjct: 123 GNVWIVGRPNLVTYRGPTMLSTTLHAVAMLLRLGRRWDWFVNLSASDYPLVTQDDL 178
>08_01_0296 +
2383578-2384220,2384754-2384829,2384942-2385057,
2385957-2386522
Length = 466
Score = 37.5 bits (83), Expect = 0.003
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Frame = +3
Query: 42 RIVFLLTLNGRALRQVHRLINVLYRVDHYFYIHVD------KRQDY-LYRXXXXXXXXFP 200
RI +LL ++ R + +Y + + +H+D +R D +Y
Sbjct: 102 RIAYLLEGTKGDGARMRRALQAIYHPRNQYILHLDLEAPPRERIDLAMYVKGDAMFSEVG 161
Query: 201 NITLATKRFSTICGGASLLKMLLSAMKDVFELGWKWDFVINLSESDLPIKSLDNL 365
N+ + K G +++ L A+ + + G +WD+ INLS SD P+ + D++
Sbjct: 162 NVRVIAKGNLVTYKGPTMVACTLHAVSILLKEGLEWDWFINLSASDYPLVTQDDI 216
>01_01_0711 + 5506632-5507328,5507410-5507485,5507544-5508234
Length = 487
Score = 32.7 bits (71), Expect = 0.097
Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Frame = +3
Query: 42 RIVFLLTLNGRALRQVHRLINVLYRVDHYFYIHVDKRQDYLYRXXXXXXXX-------FP 200
R+ +L++ + L ++ R ++ LY + + +H+D+ R
Sbjct: 120 RLAYLVSGSKGDLDRLWRTLHALYHPRNLYVVHLDREAAVSERLELAARVANSSMFRRVG 179
Query: 201 NITLATKRFSTICGGASLLKMLLSAMKDVFELGWKWDFVINLSESDLPIKSLDNL 365
N+ + + G +++ L A + WD+ INLS SD P+ + D++
Sbjct: 180 NVEVIRRSNMVTYRGPTMVANTLHACAVLLRRSRDWDWFINLSASDYPLMTQDDI 234
>04_03_0254 -
13546324-13546814,13547211-13547279,13547542-13547657,
13547835-13547910,13549752-13550274
Length = 424
Score = 31.5 bits (68), Expect = 0.22
Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Frame = +3
Query: 51 FLLTLNGRALRQVHRLINVLYRVDHYFYIHVDKRQDYLYRXXXXXXXXF-------PNIT 209
+L++ G +V RL+ +Y + + +H+D R N+
Sbjct: 65 YLISGTGGEAARVVRLLRAVYHPRNRYLLHLDAAAGAEERAELAAAVRGVRAWRERANVD 124
Query: 210 LATKRFSTICGGASLLKMLLSAMKDVFELGWKWDFVINLSESDLPIKSLDNL 365
+ + ++ G S L L + + WD+ + LS SD P+ + D+L
Sbjct: 125 VVGEGYAVDRAGPSALAAALHGAAVLLRVAADWDWFVTLSSSDYPLVTQDDL 176
>05_07_0279 +
28917281-28917400,28917535-28917617,28918171-28918321,
28918415-28918514,28918777-28918849,28918968-28919023,
28919170-28919258,28919426-28919581
Length = 275
Score = 30.3 bits (65), Expect = 0.52
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -1
Query: 376 KKFSKLSKDFMGKSLSLKLITKSHFQPNSKTSFIAESNILSKDAP 242
K S S +GK + + K QPN TSF A+ N+ SKD P
Sbjct: 184 KPASNGSMYLLGKDIPASPMHKP-LQPNGNTSFDAKKNVGSKDQP 227
>01_06_0871 - 32604968-32605470,32605546-32605722,32605821-32606355
Length = 404
Score = 29.5 bits (63), Expect = 0.90
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Frame = +3
Query: 66 NGRALRQVHRLINVLYRVDHYFYIHVDKRQDYL-------YRXXXXXXXXFPNITLATKR 224
+G ++R RL+ +Y + + +H+D Y + N+ + K
Sbjct: 75 HGDSVRMT-RLLKAVYHPRNRYLLHLDAGAGAYERARLAGYARSERAFLEYGNVHVVGKG 133
Query: 225 FSTICGGASLLKMLLSAMKDVFELGWKWDFVINLSESDLPIKSLDNL 365
G S + +L + +G +WD+++ L SD P+ + D+L
Sbjct: 134 DPVDGRGPSAVAAVLRGAAVLLRVGAEWDWLVTLGASDYPLVTPDDL 180
>03_05_0757 +
27478425-27479016,27479202-27479277,27479366-27479481,
27481043-27481608
Length = 449
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 297 GWKWDFVINLSESDLPIKSLDNL 365
G WD+ INLS SD P+ + D+L
Sbjct: 177 GADWDWFINLSASDYPLVTQDDL 199
>12_02_1271 +
27472457-27473030,27473122-27473197,27473277-27473392,
27473840-27474354
Length = 426
Score = 28.7 bits (61), Expect = 1.6
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 303 KWDFVINLSESDLPIKSLDNL 365
+WD+ INLS SD P+ + D+L
Sbjct: 173 EWDWFINLSASDYPLLTQDDL 193
>01_01_0135 +
1231687-1232188,1234489-1234564,1234646-1234743,
1234841-1235355
Length = 396
Score = 28.7 bits (61), Expect = 1.6
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +3
Query: 195 FPNITLATKRFSTICGGASLLKMLLSAMKDVFELGWKWDFVINLSESDLPIKSLDNL 365
F N+ + + + G+S L L A + L +WD+ + L+ +D P+ + D+L
Sbjct: 113 FGNVDVVGRPTAGTPMGSSGLAATLRAAAALLRLDSEWDWFVTLNAADYPLVTQDDL 169
>11_06_0128 - 20389375-20389781,20389988-20392787
Length = 1068
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 280 FIAESNILSKDAPPQIVENLLVANV 206
F A+SNILS + PP + E L+ NV
Sbjct: 560 FHAQSNILSGEIPPSLGECQLLQNV 584
>05_01_0469 -
3725117-3725170,3725282-3725356,3726938-3727015,
3727091-3727183,3727582-3727696,3728028-3728158,
3728243-3728512,3728983-3729120
Length = 317
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 376 KKFSKLSKDFMGKSLSLKLITKSHFQPNSKTSFIAESNILSK 251
KKF KL + +G L++ + SH + S+ I+ I++K
Sbjct: 177 KKFRKLGRPHLGLKLTVNFLDISHLENLSRVYGISSGLIVAK 218
>03_01_0317 +
2492030-2492591,2493189-2493249,2493951-2494066,
2494662-2495176
Length = 417
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 243 GASLLKMLLSAMKDVFELGWKWDFVINLSESDLPIKSLD 359
GAS L L + +G WD+ ++L D P+ + D
Sbjct: 149 GASTLAATLHGASLLLRVGQDWDWFVHLDAGDYPLVTPD 187
>08_01_0149 - 1176386-1177055,1177149-1177699
Length = 406
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 231 TICGGASLLKMLLSAMKDVFEL 296
T+C SLL ML+S +DV EL
Sbjct: 297 TVCSYVSLLAMLMSREEDVHEL 318
>05_03_0118 -
8586731-8587220,8587331-8587846,8588842-8588906,
8589483-8589989
Length = 525
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 109 RTFINLCTCRRARPFNVKRNTILTFSLVPNSARGLV 2
+T++ L TC RAR + + N++ T L PN + +
Sbjct: 72 QTYLGLITCNRARKIHQEVNSLFT-HLNPNFSENFI 106
>12_01_0952 - 9479462-9479584,9479626-9479709
Length = 68
Score = 26.2 bits (55), Expect = 8.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 261 MLLSAMKDVFELGWKWDF 314
+L++ K F++GWKW F
Sbjct: 27 ILVNMAKQWFDIGWKWHF 44
>11_06_0048 - 19614636-19616076,19618621-19618992,19619057-19619451
Length = 735
Score = 26.2 bits (55), Expect = 8.4
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Frame = +3
Query: 33 EKVRIVFLLTLNGRALRQVHRLINVLYRVDHYFYI----HVDKRQDYLYRXXXXXXXXFP 200
EK++ F+ + NG + R ++V V + + HVD R+ + R P
Sbjct: 271 EKIKCSFVDSENGSGIITTTRNVDVAKEVGGVYQLKPLCHVDSRKLFNLRIFGAEDKCPP 330
Query: 201 NITLATKRFSTICGGASLLKMLLSAM 278
+ ++R C G L + +++M
Sbjct: 331 QLAELSERILKKCSGVPLAIITIASM 356
>05_01_0378 +
2970528-2971008,2971961-2972036,2972108-2972253,
2972300-2972817
Length = 406
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 243 GASLLKMLLSAMKDVFELGWKWDFVINLSESDLPIKSLDNL 365
G+S L L A + L WD+ I L+ +D P+ + D+L
Sbjct: 122 GSSGLAGTLRAAAVLLRLHPDWDWFITLNAADYPVVTQDDL 162
>03_05_0350 +
23368111-23368219,23368519-23368526,23368650-23368658,
23368768-23368839,23368978-23369097,23369638-23370058,
23370131-23370285,23370461-23370625,23370822-23370825,
23371739-23371799,23371933-23372035,23372422-23372854,
23372978-23373120,23373608-23373740,23375567-23375576,
23375852-23375975,23376595-23377012,23377153-23377343,
23377569-23377811
Length = 973
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +3
Query: 270 SAMKDVFELGWKWDFVINLSES--DLPIKSLDNL 365
S +K+ G KW+ +++S + DLP+KS N+
Sbjct: 777 STLKNATHCGEKWEEPLHISSNSHDLPVKSPQNV 810
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,676,323
Number of Sequences: 37544
Number of extensions: 137763
Number of successful extensions: 320
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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