Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_B19
(365 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0266 - 16582912-16584918,16585041-16585229 31 0.21
04_03_0123 + 11514565-11514735,11515967-11516500 31 0.28
08_02_1242 - 25513665-25513997,25514184-25514257,25514317-255144... 29 0.85
04_03_0043 + 10076575-10076922 29 1.1
06_03_0902 - 25806912-25807190,25807876-25808094,25809469-258097... 29 1.5
10_02_0081 + 5030544-5030551,5030665-5031256 27 3.4
11_06_0707 + 26467214-26470309 27 4.5
11_04_0448 - 17834712-17834809,17835570-17835622,17835721-178357... 27 4.5
11_03_0148 + 10762150-10762264,10762347-10762776,10764653-107647... 27 4.5
11_01_0768 - 6442332-6443792 27 4.5
11_06_0698 + 26385989-26389090 26 7.9
04_04_0448 - 25314042-25314183,25314271-25314321,25314437-253150... 26 7.9
02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735 26 7.9
>12_02_0266 - 16582912-16584918,16585041-16585229
Length = 731
Score = 31.5 bits (68), Expect = 0.21
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 26 LKAHVAPTPHSVLLSWDPPTKNPQTVYLYRVFWRA-YGAKVPEKLDTSETSVVLTGLQDD 202
L+ ++ P S L SW PP + Q +LY+ F R Y + E L TS V+ DD
Sbjct: 548 LEGNIRQPPISFLCSWSPPPQFLQRCHLYKAFHRVPYWIQQVETL-TSLCLKVVELKGDD 606
Query: 203 VR 208
+R
Sbjct: 607 MR 608
>04_03_0123 + 11514565-11514735,11515967-11516500
Length = 234
Score = 31.1 bits (67), Expect = 0.28
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +2
Query: 17 PRHLKAHVAPTPHSVLLSWDPPTKNPQTVYLYRVFWRAYGAKVPEKL-DTSETSVVLTGL 193
P + H P H+ T+ TV Y+ + A +++P+ L ++ + + + GL
Sbjct: 88 PSRVADHSPPIRHNPFGELKRLTQT-STVVAYQECFLALTSRIPDPLTESQQVQLFIAGL 146
Query: 194 QDDVRYECVLTAANDL 241
QDD+ + L +DL
Sbjct: 147 QDDISIDVELQKPDDL 162
>08_02_1242 -
25513665-25513997,25514184-25514257,25514317-25514422,
25514507-25514557,25514629-25514700,25514785-25514924,
25515109-25515162,25515328-25515435,25515652-25515747,
25515828-25515887,25516234-25516293,25517581-25517809
Length = 460
Score = 29.5 bits (63), Expect = 0.85
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 232 Q*SWHFVTKSTDTVYHEWSRDCCSRRSCLGRVDSFC 339
Q S T TD EW+ D + CLG + S C
Sbjct: 290 QNSMILTTNRTDANIEEWNNDAANEACCLGCITSCC 325
>04_03_0043 + 10076575-10076922
Length = 115
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/22 (68%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +3
Query: 117 YSGELTGRRFQ-KNWTLARRAS 179
YSGELTG R Q K W RRAS
Sbjct: 35 YSGELTGERKQRKRWWRERRAS 56
>06_03_0902 -
25806912-25807190,25807876-25808094,25809469-25809711,
25809810-25809974,25810141-25810721,25810940-25811048,
25811158-25811250,25811474-25811535,25811895-25811967,
25812879-25813007,25814107-25814229
Length = 691
Score = 28.7 bits (61), Expect = 1.5
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Frame = +2
Query: 2 KLPGPPRHLKAHVAPTPHSVLLSWDPPTK-----------NPQTVYLYRVFWRAYGAKVP 148
K P PP+H + P + W PP K NPQT + Y V ++ A+ P
Sbjct: 13 KAPSPPKHRHDGTSGLPFG--MDWSPPPKRWEGRNTIWPHNPQTGWSYCVMIPSWIAQTP 70
Query: 149 EKLDTSE 169
E T++
Sbjct: 71 EASATAD 77
>10_02_0081 + 5030544-5030551,5030665-5031256
Length = 199
Score = 27.5 bits (58), Expect = 3.4
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +2
Query: 125 RAYGAKVPEKLDTSETSVVLTGLQDDVRYECVLTAANDLGTSSLSQPILYTTSGQETAAA 304
R Y K+P L + TSV +T L V + T A +G S L + +G + A
Sbjct: 17 RGYEWKLPAALSANTTSVHVTALDGVVNVNSLFTVAVFVGLSLADPGELRSLAGDASCDA 76
Query: 305 AAPVS 319
V+
Sbjct: 77 GQGVA 81
>11_06_0707 + 26467214-26470309
Length = 1031
Score = 27.1 bits (57), Expect = 4.5
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -1
Query: 155 VFLEPSPRKLSRIRGISTQFEGSSLVDPNLKERNVVLVRHEPSDV 21
VFL+ + R + T E SSLV+PNL + V+ E D+
Sbjct: 141 VFLKLNRRHHNESGSAWTPIESSSLVEPNLVGKEVIRACREVVDL 185
>11_04_0448 -
17834712-17834809,17835570-17835622,17835721-17835798,
17836020-17836295,17836400-17836543,17836636-17836750,
17836963-17837091,17837214-17837304
Length = 327
Score = 27.1 bits (57), Expect = 4.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 50 PHSVLLSWDPPTKNP 94
PH+VL +WDP NP
Sbjct: 44 PHNVLQTWDPTLHNP 58
>11_03_0148 +
10762150-10762264,10762347-10762776,10764653-10764735,
10764980-10765068,10765178-10765251,10765333-10765383,
10765687-10765763,10766237-10767012
Length = 564
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 287 QETAAAAAPVSDGSTASAVGVAM 355
QETAAAAA G ++S VG++M
Sbjct: 73 QETAAAAAGHGRGGSSSVVGLSM 95
>11_01_0768 - 6442332-6443792
Length = 486
Score = 27.1 bits (57), Expect = 4.5
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +2
Query: 218 VLTAANDLGTSSL-SQPILYTTSGQETAAAA---APVSDGSTASAV 343
VL AA D G + + +T+G+ETAAAA + GSTA AV
Sbjct: 12 VLVAAADAGAADKEAYAATGSTAGKETAAAADKETSAAAGSTAGAV 57
>11_06_0698 + 26385989-26389090
Length = 1033
Score = 26.2 bits (55), Expect = 7.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -1
Query: 155 VFLEPSPRKLSRIRGISTQFEGSSLVDPNLKERNVVLVRHEPSDV 21
VFL+ + R + T E SSLV+PNL + V+ E D+
Sbjct: 141 VFLKLNRRHHNGSGSAWTPIESSSLVEPNLVGKEVIRACREVVDL 185
>04_04_0448 -
25314042-25314183,25314271-25314321,25314437-25315033,
25315151-25315353
Length = 330
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 8 PGPPRHLKAHVAPTPHSVLLSWDPPTKNPQTV 103
P PPR L + TP S LL P + NP V
Sbjct: 6 PSPPRSLTSVSLRTPLSPLLFLRPASCNPSAV 37
>02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735
Length = 738
Score = 26.2 bits (55), Expect = 7.9
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +2
Query: 209 YECVLTAANDLGTSSLSQPILYTTSGQETAAAAAPVSDGSTASAVGVAMACI 364
Y +LTAA + S S L T A+A S+ STA A A +
Sbjct: 45 YGSLLTAARSTASVSASPCSLIATPAAAAASAGVIRSENSTADTAKTAPAAV 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,633,408
Number of Sequences: 37544
Number of extensions: 245082
Number of successful extensions: 861
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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