Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_B19
(365 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 39 2e-05
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 36 1e-04
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 36 1e-04
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.5
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.5
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.5
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.5
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.5
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.5
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.5
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.5
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 21 4.6
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 21 6.0
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 21 6.0
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 20 8.0
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 20 8.0
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 20 8.0
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 39.1 bits (87), Expect = 2e-05
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Frame = +2
Query: 8 PGPPRHLKAHVAPTPHSVLLSWDPPTKNPQTVYLYRVFWRAYGAKVP--EKLDTSETSVV 181
P P +KA V + S+L+SW PP++ + Y V+ +A A+ P +K+ ++ +
Sbjct: 1180 PEAPIAIKALVMSS-ESILVSWRPPSQPNGVITQYTVYTKADNAEEPTSQKVPPNQLTHE 1238
Query: 182 LTGLQDDVRYECVLTAANDLGTSSLSQPILYTTSGQETAAAAA 310
+ L RY+ +TA+ ++G S+ + S + A A+
Sbjct: 1239 ASELDKTRRYDFWVTASTNIGEGEASKIVALAPSVRVPAKIAS 1281
Score = 25.8 bits (54), Expect = 0.16
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +2
Query: 41 APTPHSVLLSWDPPTKNPQTVYLYRVFWRA-YGAKVPEKLDTSETSVVLTGLQDDVRYEC 217
A T +S+ + P + ++ Y + ++ +G ++ ++ L L RY+
Sbjct: 1376 ATTTNSLTMKVRPHPTDNAPIHGYTIHYKPEFGDWDTAQISSTVQKYTLENLLCGSRYQI 1435
Query: 218 VLTAANDLGTSSLSQPILYTTSGQE 292
+TA N +GT S + T G +
Sbjct: 1436 YVTAYNGIGTGDPSDMLNTRTKGSK 1460
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 36.3 bits (80), Expect = 1e-04
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Frame = +2
Query: 11 GPPRHLKAHVAPTPHSVLLSWDPPTKNPQ--TVYLYRVFWRAYGAKVPEKLDTSETS--- 175
GPP +L+A A + +L++W PP + + + V +R + P +S +
Sbjct: 1008 GPPINLEAR-ALSSSEILITWSPPLPELRHGDIQGFNVGYRETSSSNPSYNFSSVSGDGE 1066
Query: 176 -----VVLTGLQDDVRYECVLTAANDLGTSSLSQPILYTT 280
+ LTGL+ +Y V+ A N +G+ LS+P+L T
Sbjct: 1067 EGGAELRLTGLRPYTKYTLVVQAYNQVGSGPLSEPLLTQT 1106
Score = 33.5 bits (73), Expect = 8e-04
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Frame = +2
Query: 5 LPGPPRHLKAHVAPTPHSVLLSWDPPTKNPQTVYLYRVFWRAYGAKV-----PEKLDTSE 169
+PG P +K V +P ++ +SW PP + + Y ++ R + L
Sbjct: 1213 VPGSPADIKV-VVSSPQALFISWLPPLEPNGIITKYNLYTRVVDGREELNHGKRTLPAKN 1271
Query: 170 TSVVLTGLQDDVRYECVLTAANDLGTSSLSQ 262
T T LQ V Y+ +T + +G S+
Sbjct: 1272 TYFEATDLQQHVEYQFWVTGSTRVGEGQSSK 1302
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 36.3 bits (80), Expect = 1e-04
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Frame = +2
Query: 11 GPPRHLKAHVAPTPHSVLLSWDPPTKNPQ--TVYLYRVFWRAYGAKVPEKLDTSETS--- 175
GPP +L+A A + +L++W PP + + + V +R + P +S +
Sbjct: 1004 GPPINLEAR-ALSSSEILITWSPPLPELRHGDIQGFNVGYRETSSSNPSYNFSSVSGDGE 1062
Query: 176 -----VVLTGLQDDVRYECVLTAANDLGTSSLSQPILYTT 280
+ LTGL+ +Y V+ A N +G+ LS+P+L T
Sbjct: 1063 EGGAELRLTGLRPYTKYTLVVQAYNQVGSGPLSEPLLTQT 1102
Score = 33.5 bits (73), Expect = 8e-04
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Frame = +2
Query: 5 LPGPPRHLKAHVAPTPHSVLLSWDPPTKNPQTVYLYRVFWRAYGAKV-----PEKLDTSE 169
+PG P +K V +P ++ +SW PP + + Y ++ R + L
Sbjct: 1209 VPGSPADIKV-VVSSPQALFISWLPPLEPNGIITKYNLYTRVVDGREELNHGKRTLPAKN 1267
Query: 170 TSVVLTGLQDDVRYECVLTAANDLGTSSLSQ 262
T T LQ V Y+ +T + +G S+
Sbjct: 1268 TYFEATDLQQHVEYQFWVTGSTRVGEGQSSK 1298
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.5
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = +2
Query: 89 NPQTVYLYRVFWRAYGAKVPEKLDTSETSVVLTGLQDDV 205
NP + Y+ F P ++ + S+ L+G+Q+++
Sbjct: 360 NPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQEEL 398
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.5
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = +2
Query: 89 NPQTVYLYRVFWRAYGAKVPEKLDTSETSVVLTGLQDDV 205
NP + Y+ F P ++ + S+ L+G+Q+++
Sbjct: 360 NPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQEEL 398
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.5
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = +2
Query: 89 NPQTVYLYRVFWRAYGAKVPEKLDTSETSVVLTGLQDDV 205
NP + Y+ F P ++ + S+ L+G+Q+++
Sbjct: 360 NPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQEEL 398
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.5
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = +2
Query: 89 NPQTVYLYRVFWRAYGAKVPEKLDTSETSVVLTGLQDDV 205
NP + Y+ F P ++ + S+ L+G+Q+++
Sbjct: 360 NPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQEEL 398
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.5
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = +2
Query: 89 NPQTVYLYRVFWRAYGAKVPEKLDTSETSVVLTGLQDDV 205
NP + Y+ F P ++ + S+ L+G+Q+++
Sbjct: 360 NPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQEEL 398
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 1.5
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = +2
Query: 89 NPQTVYLYRVFWRAYGAKVPEKLDTSETSVVLTGLQDDV 205
NP + Y+ F P ++ + S+ L+G+Q+++
Sbjct: 360 NPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQEEL 398
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 1.5
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = +2
Query: 89 NPQTVYLYRVFWRAYGAKVPEKLDTSETSVVLTGLQDDV 205
NP + Y+ F P ++ + S+ L+G+Q+++
Sbjct: 428 NPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQEEL 466
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 1.5
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = +2
Query: 89 NPQTVYLYRVFWRAYGAKVPEKLDTSETSVVLTGLQDDV 205
NP + Y+ F P ++ + S+ L+G+Q+++
Sbjct: 428 NPPSGYIRSAFGTPISTGRPATVEDTSASLPLSGMQEEL 466
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.0 bits (42), Expect = 4.6
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = -1
Query: 341 PQKLSTRPRQERRLQQSLD-----HSWYTVSVDLVTKC 243
PQ+ + +Q+++ QQ L+ H+ Y V D + C
Sbjct: 1450 PQQQQQQQQQQQQQQQQLNHYPDLHNLYAVPTDKKSAC 1487
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 20.6 bits (41), Expect = 6.0
Identities = 8/34 (23%), Positives = 18/34 (52%)
Frame = -1
Query: 347 LPPQKLSTRPRQERRLQQSLDHSWYTVSVDLVTK 246
LPP + ++++ +QSL S ++++ K
Sbjct: 529 LPPSSMKETEEEKKKTKQSLSPSENQSKMEILPK 562
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 20.6 bits (41), Expect = 6.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -1
Query: 314 QERRLQQSLDHSWYTVSVDLVTKCQD 237
Q R+QQS+ W T D + + +D
Sbjct: 74 QYARVQQSMPDGWETEISDQMLELRD 99
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 20.2 bits (40), Expect = 8.0
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 171 RASYSLDYRTTYD 209
RA+YS D R YD
Sbjct: 404 RAAYSRDVRPKYD 416
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 20.2 bits (40), Expect = 8.0
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 171 RASYSLDYRTTYD 209
RA+YS D R YD
Sbjct: 404 RAAYSRDVRPKYD 416
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 20.2 bits (40), Expect = 8.0
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 171 RASYSLDYRTTYD 209
RA+YS D R YD
Sbjct: 404 RAAYSRDVRPKYD 416
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,505
Number of Sequences: 438
Number of extensions: 2363
Number of successful extensions: 21
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 8680350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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