Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_B17
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    26   3.2  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    26   3.2  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    26   4.2  
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    26   4.2  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    25   7.3  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    25   7.3  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   7.3  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   7.3  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   9.6  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   9.6  
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po...    25   9.6  
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    25   9.6  

>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -1

Query: 534 SVLMLGDKKRTKESEALRATLELPSDSCIDFVQTVDGLVFSSTN 403
           ++L   DK++  E + LR    +  +  +  +QT++ + F ST+
Sbjct: 59  NILSNDDKRKWHEKDYLRNQYSVQIEDVLQHLQTIEKIPFESTS 102


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 7/41 (17%), Positives = 25/41 (60%)
 Frame = -3

Query: 250 EERSCSQTKVSV*KNEEAIDHICDDICYYYIFKIRARRFLC 128
           ++ +  + K+++ ++ ++++H    +C++Y + + A   LC
Sbjct: 324 KDAAYQKLKLTIEESSKSVEHANQHVCFHYDYTLEADGSLC 364


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = +1

Query: 178 HHRYDRWPLHSFIHLL-SSASNFFPLFREASRANAEWIHVCTCAFQH*LFPRHLLHDSVR 354
           H   + + LH  + ++  ++S+     ++A+ +  E I V T +FQ  L      H+++ 
Sbjct: 677 HIMQENFSLHKALEVMRETSSDLDKQLKDATASQKELI-VQTSSFQKELVEERERHNAIS 735

Query: 355 CSLQELLSLASV*FQVVRRRKYETVDRLNEIN 450
             LQE+ SL      +V   + + VD+   IN
Sbjct: 736 KRLQEIESLYRDRELLVTNLEDQLVDQTVTIN 767


>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +1

Query: 301 CAFQH*LFPRHLLHDSVRCSLQELLSLA---SV*FQVVRRRKYETVDR 435
           C FQ   FP HLL + +R S +E  S A   S    + R +K  T+ +
Sbjct: 224 CLFQVRPFPNHLLINWIRASEEEKASSADRLSSALHISRDKKLTTISK 271


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -2

Query: 503 LKNQKRSEQR*NSHLTPALISFRRSTVSYFXXXXXXXXTEARESSSCRLQRTL 345
           LKNQKRSE+R    +T  +I   +  +  F         EA    S  L+  L
Sbjct: 738 LKNQKRSEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELKL 790


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 429 DGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQKMTREQLVLECTCTYV 289
           D  + S+ N L L+ G  KQFL+ AA  ++         +  T +YV
Sbjct: 672 DAFIESAKNILILEMGSDKQFLRRAAVQLLDSCKHLPDSVITTLSYV 718


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 172 RCHHRYDRWPLHSFIHLLSS 231
           RC  RYDR  L+S+  LLSS
Sbjct: 855 RCMRRYDRIRLNSYKLLLSS 874


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 208 NEEAIDHICDDICYYYIFKIRA 143
           ++EA+  +C +  Y+Y F IRA
Sbjct: 674 SDEALARLCREFQYFYPFDIRA 695


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 28/96 (29%), Positives = 36/96 (37%), Gaps = 4/96 (4%)
 Frame = +2

Query: 230 LRATSFLSFVKQAERTRNGSTYVHVHSSTSCSLVIFCMIACAAVCRNCFLLPPSS-FK*F 406
           L A+ FL F   A    N     H       SL  FC     ++  +  L+PP   F   
Sbjct: 91  LNASCFLGFCVLAHDYVNLINARHFMIEHFLSLFAFCRTILFSLLTSFLLVPPPQFFHSE 150

Query: 407 VDENTRPSTV*TKSMQESDGSSNVA---LSASDSLV 505
             E   PS     S+  S  S  VA   L+AS  +V
Sbjct: 151 AGERPTPSVGAPSSLASSMDSVRVAPSMLAASHQIV 186


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
 Frame = -1

Query: 510 KRTKESEALRATLELPSDSCIDFVQTV-DGLVFSSTNYLKLDGGKR-KQFLQTAAHAIMQ 337
           K+T + + L +  E   +  I  ++ + D L  S+   L+L   ++ K  LQT     +Q
Sbjct: 134 KQTAQLQNLLSDKEKEVEKKITIIKDLKDALASSTHQVLELQHTQQEKASLQTNYEFELQ 193

Query: 336 KMTREQLVLECTCTYV 289
           K+T++  +LE   T++
Sbjct: 194 KLTQKNSILENNNTWL 209


>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 409 DELLETRRRQEKAVPADCSARYHAEDDEG 323
           DE++E  +R  ++VP   S     ED+EG
Sbjct: 205 DEVIEDNKRLWESVPFAVSGGVSEEDEEG 233


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -2

Query: 311 WNAHVHTWIHSAFALL----ASRKRGKKLLADESKCIKE 207
           +N  V  W+  A A +     S KR ++LL+   KC+KE
Sbjct: 310 FNLTVKEWVFIANAAINGSWISGKRKEELLSSVQKCVKE 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,503
Number of Sequences: 5004
Number of extensions: 36467
Number of successful extensions: 103
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)