Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_B17
         (546 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489...    29   2.4  
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376...    28   4.2  
03_06_0445 - 33982018-33982965,33984308-33984463                       28   5.6  
01_05_0033 + 17390571-17390894,17394152-17394199,17394479-173945...    28   5.6  
11_02_0020 + 7429898-7430131,7432565-7432669,7434535-7434621,743...    27   7.4  
02_04_0546 - 23782400-23782599,23782744-23782830,23782923-237834...    27   7.4  
03_02_0138 + 5837813-5838490,5839000-5839164,5839289-5839426,583...    27   9.8  

>02_03_0307 +
           17546263-17546299,17546522-17548018,17548859-17548949,
           17549054-17549621,17550591-17550670,17550993-17551077,
           17551172-17551263,17551355-17551423,17551587-17551655,
           17552217-17552510,17552761-17552797,17552883-17552972,
           17553520-17553585,17553704-17553818,17553902-17553940,
           17554519-17554700
          Length = 1136

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -1

Query: 531 VLMLGDKKRTKESEALRATLELPSDSCIDFVQTVDGLVFSSTNYLKL 391
           V+  GDK   +ES    +T+ LPS  C D V   +     ST  L L
Sbjct: 198 VIECGDKVAQQESSTQESTVSLPSSECGDKVAQQESSTQESTVSLPL 244


>02_01_0521 +
           3768072-3768239,3768280-3768337,3769197-3769659,
           3769736-3769990,3770763-3770934,3772260-3772910,
           3773659-3774045,3774123-3774155,3774239-3774307,
           3774388-3774463,3775135-3775223,3775442-3775615,
           3775693-3775821
          Length = 907

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 229 SASNFFPLFREASRANAEWIHVCTCA--FQH*LFPRHLLHDSVRCSLQELLSLA 384
           S ++FFP F  + R  ++W+   T     Q+ LF  H L D+V C   E   LA
Sbjct: 577 SYAHFFPDFNRSPRITSDWLRPSTFEGDLQYILF-FHKLMDTVECGNTEDTVLA 629


>03_06_0445 - 33982018-33982965,33984308-33984463
          Length = 367

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -1

Query: 501 KESEALRATLELP-SDSCIDFVQTVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQKMTR 325
           K ++A     + P +D C+D ++ + GL  ++   +    GKR ++L    H+ +Q M  
Sbjct: 14  KAADAAAGADDSPEADRCLDAMRRLRGLRVTTDVLVSTQVGKRLRYLTKHPHSDIQSMAT 73

Query: 324 EQL 316
           + L
Sbjct: 74  DLL 76


>01_05_0033 +
           17390571-17390894,17394152-17394199,17394479-17394526,
           17395224-17395400,17395492-17395642,17395742-17395828,
           17397236-17397360,17397608-17397726,17399983-17400082,
           17400188-17400223
          Length = 404

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 199 PLHSFIHLLSSASNFFPLFREASRANAE 282
           PLH  ++ +  +S F P F EA R N E
Sbjct: 141 PLHKELYKMRPSSFFLPTFLEAIRTNTE 168


>11_02_0020 +
           7429898-7430131,7432565-7432669,7434535-7434621,
           7435188-7435241,7435338-7435483,7435593-7435719,
           7436200-7436208
          Length = 253

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 369 FLQTAAHAIMQKMTREQLVLECTCTYVDP 283
           +L+ +A+A    +TREQL  + TC  V P
Sbjct: 151 YLEESAYASQVLLTREQLERQYTCNEVQP 179


>02_04_0546 -
           23782400-23782599,23782744-23782830,23782923-23783442,
           23783801-23784000,23784457-23784561,23784923-23785020,
           23785168-23785271
          Length = 437

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -3

Query: 424 SRIFVDELLE---TRRRQEKAVPADCSARYHAEDDEGTTSAGMHMYIRGSIPRSL 269
           +R+F+  LLE   +  + +  V A+CS+      +E +TS G H  ++ S  + +
Sbjct: 298 ARVFMQNLLEVPCSENKSDSQVAANCSSEDIDPANESSTSNGNHSDVQESCHKDI 352


>03_02_0138 +
           5837813-5838490,5839000-5839164,5839289-5839426,
           5839496-5839647,5839754-5839862,5840551-5840649,
           5840739-5840804,5840891-5840998,5841820-5841906
          Length = 533

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 361 DCSARYHAEDDEGTTSAGMHMYIRGSIPRSLCLLHEREE 245
           D  +RY  ED  G      HM  +G+  R+   L E  E
Sbjct: 128 DAGSRYETEDSAGVAHFVEHMLFKGTGDRNAAQLEEEIE 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,555,850
Number of Sequences: 37544
Number of extensions: 231034
Number of successful extensions: 600
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)