Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_B17
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    32   0.31 
Z19155-4|CAA79560.3|  844|Caenorhabditis elegans Hypothetical pr...    31   0.72 
Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z72512-8|CAH04717.1|  583|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z72512-7|CAA96668.3|  568|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z83118-1|CAB05575.1|  975|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81552-6|CAB04489.1|  975|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81116-12|CAB03309.1|  414|Caenorhabditis elegans Hypothetical p...    28   5.0  
U41015-4|AAA82313.1|  317|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z50797-3|CAC35828.1|  802|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z50797-2|CAA90672.1|  800|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z46266-5|CAA86412.1|  375|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 412 VDELLETRRRQEKAVPADCSARYHAEDDEGTT 317
           +DE+++  R  EK +P  C+ R HA   +GT+
Sbjct: 673 IDEIIKNSRGYEKLIPPSCTFRAHASPWKGTS 704


>Z19155-4|CAA79560.3|  844|Caenorhabditis elegans Hypothetical
           protein F54G8.5 protein.
          Length = 844

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +2

Query: 191 IDGLFILLYTYFRLRATSFLSFVKQA--ERTRNGSTYVHVHSSTSCSLVIFCMIACAAV 361
           ID     +  Y    +T F S  K    E  RNG   +     TS  LV+FCM AC+++
Sbjct: 228 IDLFLSAIPRYKETNSTIFWSSSKSLAKEMERNGELLIPWMPWTSLVLVVFCMFACSSL 286


>Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical
           protein C46F11.4 protein.
          Length = 811

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -3

Query: 430 RRSRIFVDELLETRRRQEKAVPADCSARYHAEDDE 326
           RR RI+ DE LE     EK  PA  S++  A+DD+
Sbjct: 85  RRKRIYDDEYLEGGSDDEK--PASSSSKLAADDDD 117


>Z72512-8|CAH04717.1|  583|Caenorhabditis elegans Hypothetical
           protein R07B5.8b protein.
          Length = 583

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = -1

Query: 501 KESEALRATLELPSDSCIDFVQ-----TVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQ 337
           +ESEA + T       C+D+V      ++DG    S   ++ D  +RK   +T  H  M+
Sbjct: 428 RESEASKETKVQYDPECLDWVPRKMRPSMDGYHELSKEEIEQDEQRRKSIQKTPVHVSME 487

Query: 336 KMT 328
           K T
Sbjct: 488 KAT 490


>Z72512-7|CAA96668.3|  568|Caenorhabditis elegans Hypothetical
           protein R07B5.8a protein.
          Length = 568

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = -1

Query: 501 KESEALRATLELPSDSCIDFVQ-----TVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQ 337
           +ESEA + T       C+D+V      ++DG    S   ++ D  +RK   +T  H  M+
Sbjct: 473 RESEASKETKVQYDPECLDWVPRKMRPSMDGYHELSKEEIEQDEQRRKSIQKTPVHVSME 532

Query: 336 KMT 328
           K T
Sbjct: 533 KAT 535


>Z83118-1|CAB05575.1|  975|Caenorhabditis elegans Hypothetical protein
            F56G4.1 protein.
          Length = 975

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 197  GLFILLYTYFRLRATSF--LSFVKQAERTRNGSTYVHVHSSTSCSLVIFCMI 346
            G F+ LYT  ++R + F  +S         + ST V +     CSL+I C+I
Sbjct: 861  GCFLFLYTTLQVRFSYFYKISVDGTTSILTSKSTRVFLKKWFECSLLIICLI 912


>Z81552-6|CAB04489.1|  975|Caenorhabditis elegans Hypothetical protein
            F56G4.1 protein.
          Length = 975

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 197  GLFILLYTYFRLRATSF--LSFVKQAERTRNGSTYVHVHSSTSCSLVIFCMI 346
            G F+ LYT  ++R + F  +S         + ST V +     CSL+I C+I
Sbjct: 861  GCFLFLYTTLQVRFSYFYKISVDGTTSILTSKSTRVFLKKWFECSLLIICLI 912


>Z81116-12|CAB03309.1|  414|Caenorhabditis elegans Hypothetical
           protein T06C12.13 protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 540 ESSVLMLGDKKRTKESEALRATLELPSDSCIDFVQTVD 427
           E SV M G++  TK   A+     +  DSCID+ +  D
Sbjct: 248 EMSVKMFGNQVLTKRKFAISNEKLMVMDSCIDYSEITD 285


>U41015-4|AAA82313.1|  317|Caenorhabditis elegans Hypothetical
           protein F20B6.5 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +2

Query: 263 QAERTRNGSTYVHVHSSTSCSLV---IFCMIACAAVCRNCFL 379
           Q +  R+ +T  H+H  T+C  V   I CMI        C+L
Sbjct: 274 QGQMIRSMNTLAHLHKCTTCQTVAQKIDCMILSLKTYIGCYL 315


>Z50797-3|CAC35828.1|  802|Caenorhabditis elegans Hypothetical
           protein T22H6.2b protein.
          Length = 802

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 447 DFVQTVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQK 334
           D +  V  L  +S N L L GGK  +    A HA++Q+
Sbjct: 479 DCLPQVASLAMASGNALLLKGGKEAEESNKALHALVQE 516


>Z50797-2|CAA90672.1|  800|Caenorhabditis elegans Hypothetical
           protein T22H6.2a protein.
          Length = 800

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 447 DFVQTVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQK 334
           D +  V  L  +S N L L GGK  +    A HA++Q+
Sbjct: 477 DCLPQVASLAMASGNALLLKGGKEAEESNKALHALVQE 514


>Z46266-5|CAA86412.1|  375|Caenorhabditis elegans Hypothetical
           protein C07B5.5 protein.
          Length = 375

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 409 DELLETRRRQEKAVPADCSARYHAED 332
           D ++ET RR  + +P DC   YHA D
Sbjct: 279 DLVVETWRRGSE-IPLDCKLTYHAND 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,007,532
Number of Sequences: 27780
Number of extensions: 207123
Number of successful extensions: 566
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)