Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_B16
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    29   0.50 
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    27   1.5  
SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ...    27   1.5  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    26   3.5  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   6.2  
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces...    25   8.2  

>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 18/69 (26%), Positives = 40/69 (57%)
 Frame = +3

Query: 279 LKYMQLVEDAEKILEKVQQVDQEDVEEGTLHHLQHNMYQSQQQTEFLYGI*MKQLSFFIH 458
           LK++   E+AE I ++++    + +E+G   +   N  Q Q Q++ +  +  +Q++F I+
Sbjct: 613 LKFIGSSENAELIHQRLRNGLPKSIEKGPFIYNPFNRRQDQNQSKSVLVV-DEQVAFSIY 671

Query: 459 Y*REPMQLS 485
           + R P+ +S
Sbjct: 672 F-RNPLSVS 679


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 330 QQVDQEDVEEGTLHHLQHNMYQSQQQTEFLYG 425
           ++  QEDV +GT   L  ++ Q    T F YG
Sbjct: 103 EEASQEDVYKGTTEPLLDSVLQGYNATVFAYG 134


>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 284

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 38  LEIKHQHSINNTSKRNTIIMNKENENYSNKRRKLSTS 148
           +E+ HQ S+    + N     +  E Y++  R+L TS
Sbjct: 42  IEMLHQQSLQEIDEANIAATTRHLEGYTSDTRRLQTS 78


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 17  VVTIFYILEIKHQHSINNTSKRNTIIMNKENENYSNKRRK 136
           +VT F IL I+        S++NT+ +N + +  S +RRK
Sbjct: 535 IVTFFSILRIRSSEVRPLKSQKNTVSINNKIDT-SKRRRK 573


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 233 MLPSINDTSPLSPIKAEVHAASRRCRE 313
           M+P +N TSP +P ++     S  CRE
Sbjct: 17  MVPQVN-TSPFAPAQSSSPLPSNSCRE 42


>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 350

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +2

Query: 65  NNTSKRNTIIMNKENENYSNK 127
           +++ K NT+ +NKENE +S+K
Sbjct: 183 DSSQKENTLTLNKENE-FSSK 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,702,249
Number of Sequences: 5004
Number of extensions: 29220
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)