Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_B16
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0070 + 582659-583426,583535-583624,584130-584208,584387-58...    38   0.006
04_03_0811 - 19909128-19912214                                         29   1.5  
05_03_0293 - 11813846-11813965,11814073-11814408,11814516-118146...    29   2.0  
03_06_0553 - 34682581-34683183,34683687-34683842,34684154-346842...    29   2.7  
12_01_0119 + 905916-907277,907737-907774,908269-908492,909411-90...    27   6.2  
08_02_0678 - 19971416-19971930,19971970-19973347,19974122-199745...    27   6.2  
02_02_0212 - 7915358-7915431,7915515-7916127                           27   6.2  
04_04_1242 - 32016553-32016857,32017628-32017784,32017871-320180...    27   8.2  

>06_01_0070 +
           582659-583426,583535-583624,584130-584208,584387-584493,
           584619-584740,585003-585030,587148-587390,587986-588153,
           589133-589226,589648-589746,589995-590150,590379-590629
          Length = 734

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = +2

Query: 413 VFIWDLDETIIIFHSLLTGTYATKYN 490
           V+IWD+DET+I+  SLL G+YA  ++
Sbjct: 423 VYIWDMDETLILLKSLLDGSYAGAFD 448


>04_03_0811 - 19909128-19912214
          Length = 1028

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +3

Query: 282  KYMQLVEDAE-KILEKVQQVDQ-EDVEEGTLHHLQHNMYQSQQQTEFLYGI*MKQLSFFI 455
            K + L++D     L K+   D+ ED +  + HH++H +  +    + L  + + QL   I
Sbjct: 797  KSISLIDDIYVSCLTKLSSFDKLEDCKLRSCHHMKHVLEYAYSMGQSLQNVRVSQLQSLI 856

Query: 456  HY*REPMQLSTT 491
            H+  +P++ + T
Sbjct: 857  HF-YKPLEYNDT 867


>05_03_0293 -
           11813846-11813965,11814073-11814408,11814516-11814617,
           11814729-11814912,11815012-11815196,11815949-11816095,
           11816310-11816426
          Length = 396

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 303 DAEKILEKVQQVDQEDVEEGTLHHLQHNMYQSQQQ 407
           DA+K+L+   +V  + +    LHHL  N + S Q+
Sbjct: 347 DADKLLQSFPKVPSDKLRAQILHHLIFNRFNSVQE 381


>03_06_0553 -
           34682581-34683183,34683687-34683842,34684154-34684272,
           34684691-34684793,34685027-34685299,34685411-34685602,
           34686691-34687029
          Length = 594

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 465 VNNE*KMIIVSSKSHIKTLSVAGSGTCCAGD 373
           V +E K+++ S+ + I T SVAGSG    GD
Sbjct: 436 VTSEEKIVLSSNDNVISTKSVAGSGFAAQGD 466


>12_01_0119 +
           905916-907277,907737-907774,908269-908492,909411-909637,
           909733-909980,910275-910557,910707-911135
          Length = 936

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 318 LEKVQQVDQEDVEEGTLHHLQHNMYQSQQQT 410
           L++    DQEDVEE     + + M Q QQQ+
Sbjct: 200 LDQWDSDDQEDVEESGFDEIVNTMTQHQQQS 230


>08_02_0678 -
           19971416-19971930,19971970-19973347,19974122-19974518,
           19974533-19974645,19977436-19977903,19977935-19978059,
           19978192-19978452,19984254-19984647
          Length = 1216

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 315 ILEKVQQVDQEDVEEGTLHHLQHNMYQSQQQTEF 416
           + +K+QQ+DQ +V EG +  +  +     Q+ EF
Sbjct: 17  VKKKIQQLDQSEVNEGNVMTITPDKLTPDQKKEF 50


>02_02_0212 - 7915358-7915431,7915515-7916127
          Length = 228

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 315 ILEKVQQVDQEDVEEGTL 368
           + EK+QQ+DQ DV EG +
Sbjct: 17  VKEKIQQLDQSDVNEGNV 34


>04_04_1242 -
           32016553-32016857,32017628-32017784,32017871-32018089,
           32018184-32018470,32018629-32019934,32020021-32020178,
           32020250-32020335,32023106-32023173,32023297-32023340,
           32023418-32023490,32023605-32023684,32023774-32023867,
           32023981-32024151,32024463-32024557,32025049-32025128,
           32025137-32025333,32025896-32026183
          Length = 1235

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/50 (24%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = +2

Query: 8   GKVVVTIFYILEIKHQHSINNTSKRNTIIMNKEN-ENYSNKRRKLSTSGT 154
           GK+ +T+  +  ++ +  + N  K + +++ K+N E+ S+  R++ +SG+
Sbjct: 91  GKLQITLPSVSNVQVEPIVVNIDKLDLVLVEKDNSEDLSSTSRQIHSSGS 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,103,824
Number of Sequences: 37544
Number of extensions: 159728
Number of successful extensions: 425
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)