Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_B16
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67954-2|AAB52606.1|  168|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z74033-10|CAA98478.1|  805|Caenorhabditis elegans Hypothetical p...    29   1.8  
AL022272-5|CAA18355.1|  805|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z37093-3|CAA85465.1|  448|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z22180-8|CAA80177.2|  107|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AF125952-1|AAD14701.1|  571|Caenorhabditis elegans Hypothetical ...    28   4.2  
Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U80454-4|AAB37876.3|  896|Caenorhabditis elegans Prion-like-(q/n...    27   7.4  

>U67954-2|AAB52606.1|  168|Caenorhabditis elegans Hypothetical
           protein F41D9.2 protein.
          Length = 168

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 373 ISSTTCTRASNRQSFYMGFR*NNYHFSFIING 468
           + ST CT  +N Q    G R N  HF  ++ G
Sbjct: 13  VESTPCTFVTNGQQITYGVRGNTIHFRVVLTG 44


>Z74033-10|CAA98478.1|  805|Caenorhabditis elegans Hypothetical
           protein H12C20.2a protein.
          Length = 805

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 38  LEIKHQHSINNTSKRNTIIMNKENENYSNKRRKLSTSGTDDEFXXXXXXXXY 193
           L+I   HS   +S  +  IMN   +++SN     S S T D+F        Y
Sbjct: 363 LKIVGSHSTVRSSVEDRRIMNLSQQSFSNASFMSSKSSTPDDFNNTTLNSTY 414


>AL022272-5|CAA18355.1|  805|Caenorhabditis elegans Hypothetical
           protein H12C20.2a protein.
          Length = 805

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 38  LEIKHQHSINNTSKRNTIIMNKENENYSNKRRKLSTSGTDDEFXXXXXXXXY 193
           L+I   HS   +S  +  IMN   +++SN     S S T D+F        Y
Sbjct: 363 LKIVGSHSTVRSSVEDRRIMNLSQQSFSNASFMSSKSSTPDDFNNTTLNSTY 414


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
           protein W01F3.3 protein.
          Length = 2175

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +3

Query: 288 MQLVEDAEKILEKVQQVDQEDVEEGTLHHLQHNMYQSQQQTEFLYGI 428
           ++ VED E+  E+V + +QED +E    H+Q  +  SQQ T  L GI
Sbjct: 682 VKTVEDEEEEEEEVVEEEQEDGKEEPPLHVQPPV--SQQNTVLLGGI 726


>Z37093-3|CAA85465.1|  448|Caenorhabditis elegans Hypothetical
           protein ZK669.4 protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 340 IKRTWKKEHFIISSTTCTRASNRQSFYM 423
           +K +W  +H ++   T  R SNR  FY+
Sbjct: 410 MKVSWCADHRVVDGATMARFSNRWKFYL 437


>Z22180-8|CAA80177.2|  107|Caenorhabditis elegans Hypothetical
           protein K11H3.5 protein.
          Length = 107

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 267 LQ*KLKYMQLVEDAEKILEKVQQVDQEDVEE 359
           LQ + K +Q++E+ + +LEKV +    D+EE
Sbjct: 37  LQNEQKSLQMLEEEQALLEKVVETLSNDIEE 67


>AF125952-1|AAD14701.1|  571|Caenorhabditis elegans Hypothetical
           protein C01B4.9 protein.
          Length = 571

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +3

Query: 279 LKYMQLVEDAEKILEKVQQVDQEDVEEGTLHHLQHNMYQSQQQTEF 416
           LK+ + +++ +K+  K  +  +  V   T HH  H++ +  + T+F
Sbjct: 305 LKFRETIKNRKKLDRKAAESAEAHVVHATEHHTVHHVVKKSKFTKF 350


>Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical
           protein F33H1.4 protein.
          Length = 1385

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 303 DAEKILEKVQQVDQEDVEEGTLHHLQH-NMYQSQQQTE 413
           +   ++E+ QQV QE+VE+  + + Q    +Q QQQ E
Sbjct: 655 EPHNMVEQEQQVMQEEVEQEDVKNKQQIRQHQQQQQQE 692


>U80454-4|AAB37876.3|  896|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 66
           protein.
          Length = 896

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -3

Query: 377 EMMKCSFFHVLLIYLLYFLQNFLCIFY*LHVLQLLLETVD*YHLL 243
           E++ CS F +  I  L F  +   I + +H+ + +++TV  + L+
Sbjct: 402 ELLYCSLFTIATISSLRFFHSIQSIGFFVHIFKKMMKTVGMFILI 446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,313,968
Number of Sequences: 27780
Number of extensions: 159722
Number of successful extensions: 657
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)