Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_B14
(442 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 186 1e-48
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 186 1e-48
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 186 1e-48
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 68 7e-13
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 42 3e-05
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 1.7
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 27 1.7
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 2.2
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom... 26 3.0
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 26 3.0
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 3.0
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc... 25 3.9
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 5.2
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 25 6.8
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 24 9.0
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 24 9.0
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 24 9.0
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 9.0
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 24 9.0
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 24 9.0
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 186 bits (453), Expect = 1e-48
Identities = 82/122 (67%), Positives = 103/122 (84%)
Frame = +3
Query: 9 NKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFK 188
NKMD+T +S++RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++
Sbjct: 153 NKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQ 210
Query: 189 GWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVDTGIL 368
GW E K G +GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRV+TG++
Sbjct: 211 GWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVI 270
Query: 369 KP 374
KP
Sbjct: 271 KP 272
Score = 37.1 bits (82), Expect = 0.001
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +1
Query: 376 GTDVVFAPANITTEVKSEEMHH 441
G V FAPA +TTEVKS EMHH
Sbjct: 273 GMIVTFAPAGVTTEVKSVEMHH 294
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 186 bits (453), Expect = 1e-48
Identities = 82/122 (67%), Positives = 103/122 (84%)
Frame = +3
Query: 9 NKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFK 188
NKMD+T +S++RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++
Sbjct: 153 NKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQ 210
Query: 189 GWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVDTGIL 368
GW E K G +GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRV+TG++
Sbjct: 211 GWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVI 270
Query: 369 KP 374
KP
Sbjct: 271 KP 272
Score = 37.1 bits (82), Expect = 0.001
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +1
Query: 376 GTDVVFAPANITTEVKSEEMHH 441
G V FAPA +TTEVKS EMHH
Sbjct: 273 GMIVTFAPAGVTTEVKSVEMHH 294
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 186 bits (453), Expect = 1e-48
Identities = 82/122 (67%), Positives = 103/122 (84%)
Frame = +3
Query: 9 NKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFK 188
NKMD+T +S++RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++
Sbjct: 153 NKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQ 210
Query: 189 GWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVDTGIL 368
GW E K G +GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRV+TG++
Sbjct: 211 GWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVI 270
Query: 369 KP 374
KP
Sbjct: 271 KP 272
Score = 37.1 bits (82), Expect = 0.001
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +1
Query: 376 GTDVVFAPANITTEVKSEEMHH 441
G V FAPA +TTEVKS EMHH
Sbjct: 273 GMIVTFAPAGVTTEVKSVEMHH 294
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 67.7 bits (158), Expect = 7e-13
Identities = 46/121 (38%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Frame = +3
Query: 9 NKMDSTEPPYSESRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNMLEPSTK--MP 179
NK+D +SE RF+EIK VS + IK +G+ + V FVPIS G N+++ +
Sbjct: 323 NKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYK 380
Query: 180 WFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVDT 359
W+KG L+ ALD ++PP +P K LRL + DVY+ TV GRV+
Sbjct: 381 WYKG------------PTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTV-TGRVEA 427
Query: 360 G 362
G
Sbjct: 428 G 428
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 42.3 bits (95), Expect = 3e-05
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +3
Query: 234 LIEALDAILP-PARPTDKALRLPLQDVYKIGGIGTVPVGRVDTGILK 371
L+EA+D+ + P R TD + ++DV+ I G GTV GRV+ G LK
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLK 280
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 22 PLSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLS 123
P S +++ +K +LPTS K++T PS+S
Sbjct: 402 PTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVS 435
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.6 bits (56), Expect = 1.7
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Frame = +1
Query: 199 LSVKKERLKVNALLRPSTPS--FRLLAPLTRLSVF--PCKTY----TKSAVLEQYPWVEL 354
+SV K+RL + PSTPS L P SV+ K + + ++L+++P V+
Sbjct: 406 VSVAKDRLSLTPSSTPSTPSPAESLPQPSNPTSVYAKSLKEFWLDKYRLSILQKWPAVK- 464
Query: 355 TLVS*SLGTDVVFAP 399
+L + S+G DVV P
Sbjct: 465 SLPTESVGIDVVMEP 479
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 2.2
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = -3
Query: 314 VYVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSLEPWHFGGRLQHVI 147
V++ Q + S++ G + + V LNKAF+ S + F + S P HF ++ +V+
Sbjct: 1522 VWLSQAYSPSVLQGTT---ENVAFLNKAFSASANLFDVLPVSNTPSHF-SKMDYVL 1573
>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 25.8 bits (54), Expect = 3.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 295 FPCKTYTKSAVLEQYPWVELTLV 363
FPCK S L QYP+ + L+
Sbjct: 173 FPCKASAHSVPLSQYPYRTVILI 195
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.8 bits (54), Expect = 3.0
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +1
Query: 67 RKSLPTSRKLVTIRLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKE 216
R+S S + + LPS PF++ + + ++P G + KKE
Sbjct: 639 RRSFKPSEEAAKLSLPSRKNPFVSDSAVLKVNKPEMKEGQKKAEARKKKE 688
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 3.0
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +3
Query: 15 MDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWF 185
+D +P + F IKK+V Y+ ++ + P + G N LEP TK PW+
Sbjct: 107 LDLKKPLLPQILFGNIKKDV--YLDQV-HRPRHYRGSGSAPLFG-NFLEPLTKTPWY 159
>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 138
Score = 25.4 bits (53), Expect = 3.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 24 TEPPYSESRFEEIKKEVSSYIKK 92
+EPP + S +E+ KKE+ I+K
Sbjct: 9 SEPPVNVSYYEQCKKELHEMIEK 31
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.0 bits (52), Expect = 5.2
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +3
Query: 66 KEVS---SYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 191
KEVS SYI +P +G+ +N+++P + P FKG
Sbjct: 159 KEVSTSKSYISSGYLHPKTSPIFKKNGYATENVVDPISSSPRFKG 203
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 24.6 bits (51), Expect = 6.8
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +3
Query: 192 WLVERKEGKAEGKCLIEALDAILPPARPTDKALRLP 299
+L+ + K G E++DA+LP + +L +P
Sbjct: 628 YLLSSENAKDTGDIKSESIDAVLPTLETSSPSLSIP 663
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 24.2 bits (50), Expect = 9.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 231 CLIEALDAILPPARPTDKALRLPLQD 308
CLIE +AILP +DK L + +
Sbjct: 1349 CLIEKSNAILPHGSTSDKLFLLEIPE 1374
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 24.2 bits (50), Expect = 9.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 426 GLDFSSDVSRGKYDISTKA 370
G+DF S ++R +YD++ A
Sbjct: 314 GIDFHSSINRLRYDLAASA 332
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 24.2 bits (50), Expect = 9.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 144 GDNMLEPSTKMPWFKGWLVERKEGK 218
GD +L + PW+ L+ RKE K
Sbjct: 53 GDRILVKAPGYPWWPALLLRRKETK 77
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 24.2 bits (50), Expect = 9.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 249 DAILPPARPTDKALRLPLQDVYKIGGIGTVPV 344
+ I P A+P+D+ L + + +GT+PV
Sbjct: 505 ERIEPEAKPSDETLTVRSSRDLSVHNVGTLPV 536
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 24.2 bits (50), Expect = 9.0
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 25 LSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLSYPFLAGTEITCWS 162
LS+ T L + KSL ++ +T R+ +L+ P++ +CW+
Sbjct: 414 LSNDTNKLAVYMGFYKSLQSAGAAITYRMDTLNIPYM-NYFASCWA 458
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 24.2 bits (50), Expect = 9.0
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -3
Query: 296 KTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSLEPWHFG 168
+T L S +S + VEGLN S N PS + HFG
Sbjct: 309 ETSELSSTSSEQTSDVEGLNAYNNLGASSDIENAPSSQ-LHFG 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,300
Number of Sequences: 5004
Number of extensions: 44204
Number of successful extensions: 172
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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