Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_B12
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    29   0.49 
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    29   0.65 
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    28   0.86 
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   3.5  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   3.5  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   4.6  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    26   4.6  
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos...    25   8.0  

>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 237 CILGFTLSACFISRTRAVKPSLCSDSLSSTGVVPNVFL 124
           CI GF ++  + +RTR + PS    +LS T V+   FL
Sbjct: 325 CIAGFVVNEFYTTRTRIITPS-AFKTLSLTSVMVTSFL 361


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -3

Query: 407 RGSAVRKSVQCS---PPLWGYVQVYNSQMP 327
           +G ++ KS  CS   PPL G+V V+N Q P
Sbjct: 256 KGKSIIKSQNCSDGLPPLPGFVVVFNLQSP 285


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 237 CILGFTLSACFISRTRAVKPSLCSDSLSSTGVVPNVFL 124
           CI GF ++  + +RTR + PS    +LS + V+   FL
Sbjct: 325 CIAGFVVNELYTTRTRIIAPS-AFQTLSLSSVMVTSFL 361


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
 Frame = +2

Query: 155  DKESEHREG---FTALVRE--MKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDIV 319
            D ES H EG   F   + E  MK+ALN    ++  +S     ++ I FD    I   D V
Sbjct: 985  DYESHHGEGNVHFNVTLTEAGMKEALNESLEVKFKLSRTQATSNMIAFDASGRIKKYDSV 1044

Query: 320  NIQAFDYY 343
                 ++Y
Sbjct: 1045 EDILTEFY 1052


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 465 PTNLSL-VSAPLDVRGSSIQTVKFPEFHRYT 554
           PT L    SA  DVR +S   +   +FH+Y+
Sbjct: 51  PTELKARTSATFDVRSASTSPINASDFHKYS 81


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 383 PIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWK--LDSDSEIS 535
           P   PQ+ + +QN +  +   +  G P  K V+ +  T        DSDS++S
Sbjct: 777 PESPPQSYESIQNDNELLQELLSMGFPREKAVIALEATNYDVNEVSDSDSKLS 829


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 319 DNVDQVYDAWDVKVNGAIYVWQ 254
           D VD++YDAW    N     WQ
Sbjct: 54  DYVDEMYDAWKKDPNSVHASWQ 75


>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
           Mms2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 278 YFDVPSIINLVDIVNIQAFDYYTPERNPKEAD 373
           Y D P I+  V  +N+   D  T + NP + D
Sbjct: 68  YPDAPPIVTFVSRINLPGVDGETGKVNPHKID 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,657
Number of Sequences: 5004
Number of extensions: 50379
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)