Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_B12
(580 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0649 - 18402976-18403220,18403305-18404499 42 3e-04
11_04_0234 + 15187065-15188241,15188316-15188494 40 0.001
12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861 32 0.29
12_02_0239 - 16125105-16126025,16126966-16127415 31 0.88
12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718 29 2.7
08_01_0192 + 1594530-1594682,1594755-1594955,1595051-1595280,159... 29 3.5
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272... 29 3.5
12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156 28 4.7
02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493... 28 4.7
12_02_0292 + 16979550-16980662,16983249-16983731 27 8.2
08_02_0113 - 12715888-12716181,12717443-12717602,12718327-127183... 27 8.2
07_01_0465 + 3513296-3513631,3514386-3514442,3515196-3515306,351... 27 8.2
05_03_0191 - 9521496-9521921 27 8.2
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 42.3 bits (95), Expect = 3e-04
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Frame = +2
Query: 284 DVPS--IINLVDIVNIQAFDYYTP-ERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQN 454
D PS + +D VN+ AF P N + AP+Y +R +A + W+
Sbjct: 215 DYPSETVARSLDWVNVMAFGLRPPGAANANATAFDAPLY---DRASHYSASYGVVSWLDA 271
Query: 455 GAPTHKLVLGISTTGRTWKLDSDSEISGV 541
G P K+V+GI GR+W L + + SGV
Sbjct: 272 GVPASKVVMGIPLYGRSWFLRNKAN-SGV 299
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +2
Query: 8 AALLLAEQYGFDGIDLSWQLP 70
AA+ +A + GFDG+D++W+ P
Sbjct: 150 AAVKVARENGFDGLDVAWRFP 170
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 39.9 bits (89), Expect = 0.001
Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 1/180 (0%)
Frame = +2
Query: 8 AALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFWHSIKKTFGTTPVDDKESEHREGFT 187
+++ LA GFDG+DL+W+ P + ++G + + +E E T
Sbjct: 145 SSIELARANGFDGLDLAWRFPATQLDM--ENLGDL------------LAEWRAEIMEDST 190
Query: 188 ALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKE 367
E L + + + ++++ + + + + +D VNI F + N
Sbjct: 191 TRSTE---PLLLTATVYFSNHLFGMADTNLNYPIDDMSSSLDWVNIITFSLHK-NSNVTT 246
Query: 368 ADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWKL-DSDSEISGVP 544
AD AP+Y ++D +A + W+ G P KLV+GI GR+W L + D G P
Sbjct: 247 AD--APLY---DKDSHFSASYGVISWLDAGLPPCKLVMGIPLFGRSWFLRNKDKNGLGAP 301
>12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861
Length = 443
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 191 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 316
LVR+ K + K NMQL++ +LP Y V I DI
Sbjct: 340 LVRKAKHEMKTKENMQLMVDLLPLWREKPYIKVERIFETCDI 381
>12_02_0239 - 16125105-16126025,16126966-16127415
Length = 456
Score = 30.7 bits (66), Expect = 0.88
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +2
Query: 101 IGSFWHSIKKTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNSSIY 280
+G + + + T V + + E LVR+ K + + NMQL++ V+P Y
Sbjct: 310 LGYYGNGLMYPIVETTVKELCTNPLEHTIELVRKAKHKIRTEENMQLMVDVMPLWYEKPY 369
Query: 281 FDVPSIINLVDI 316
V I DI
Sbjct: 370 IKVQRIFETCDI 381
>12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718
Length = 490
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 191 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 316
LVR+ K + + NMQL + +LP Y V I DI
Sbjct: 381 LVRKAKDEMKTEENMQLRVDLLPLWREKPYIKVQRIFEACDI 422
>08_01_0192 +
1594530-1594682,1594755-1594955,1595051-1595280,
1595596-1595766,1595902-1596007,1596339-1596545,
1596638-1596802
Length = 410
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 14 LLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFW 115
+L+ E + FD L+W + R P +I++++ +W
Sbjct: 343 ILVGEVFRFDLDTLTWSVIGRMPFRIKTALAGYW 376
>07_01_0365 +
2718707-2718839,2719335-2719405,2719512-2719955,
2720660-2721802
Length = 596
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 408 ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 518
++Y +PT++ + GF + LSLV+A L+ GS +
Sbjct: 293 VMYYSPTIVQLAGFASNQTALALSLVTAGLNAAGSLV 329
>12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156
Length = 457
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 191 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 316
LVR+ K + ++ NMQL + +LP Y + I DI
Sbjct: 338 LVRKAKDEMMIEENMQLRVDLLPLWREKPYIKLQRIFETCDI 379
>02_05_0272 -
27348537-27348728,27349035-27349192,27349292-27349323,
27349420-27349514,27349614-27349687,27349800-27349878,
27350015-27350078,27350156-27350218,27350300-27350442,
27350566-27350703,27350792-27350913,27350993-27351158,
27351276-27351398,27351609-27351680,27351773-27351880,
27352481-27352597,27352727-27352865,27352974-27353080,
27353167-27353276,27353892-27354025,27354106-27354255,
27354329-27354549,27354647-27355318
Length = 1092
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +2
Query: 146 PVDDKESEHREGFTALVREMKQALNV-KPN---MQLVISVLPNVNSSIYFDVPSI 298
P+ EH E AL ++A+N+ KP + L+I++LP+ N S+Y D+ I
Sbjct: 660 PLVTARPEHVE--RALKARYQEAMNILKPQGGELDLLIAILPDNNGSLYGDLKRI 712
>12_02_0292 + 16979550-16980662,16983249-16983731
Length = 531
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +1
Query: 466 PQTCPWYQHHWTYVEARFR 522
P+ W QHHWT R R
Sbjct: 505 PEAKSWRQHHWTPARTRLR 523
>08_02_0113 -
12715888-12716181,12717443-12717602,12718327-12718368,
12718443-12718465,12718616-12720653,12720736-12720965,
12722207-12722329,12722438-12723010,12724684-12724733,
12726828-12726923,12726987-12727394,12727609-12727795
Length = 1407
Score = 27.5 bits (58), Expect = 8.2
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Frame = +2
Query: 230 NMQLVISVLPNVNSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRD 409
++Q+++S P + F V + N + +V + A +T K+AD + Q R
Sbjct: 570 DLQILLSSGPY--EELNFGVEAAENALSVVKLIAILIFTVHNANKDADNQSYAEIVQRRV 627
Query: 410 PLQNADAA----INYWIQNGAPTHKLVLGI 487
LQNA AA + Y ++ A H + I
Sbjct: 628 LLQNAFAAAFEFVGYLLKRCAELHDVASSI 657
>07_01_0465 +
3513296-3513631,3514386-3514442,3515196-3515306,
3515466-3515552,3515627-3515740,3515850-3516056,
3516291-3516428,3516691-3516852,3516939-3517138,
3517429-3517554,3517644-3517785
Length = 559
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +2
Query: 155 DKESEHREGFT---ALV-----REMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIIN 304
+KE+ H EGF+ ALV +E+++ L V+P + +++ + Y D+P +IN
Sbjct: 139 EKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTKWIQSYRDLPLMIN 196
>05_03_0191 - 9521496-9521921
Length = 141
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +1
Query: 454 WCAYPQTCPWYQHHWTYVEARFR 522
W P+ W++ HWT AR R
Sbjct: 119 WQRRPEAEKWWRRHWTPARARLR 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,860,808
Number of Sequences: 37544
Number of extensions: 329044
Number of successful extensions: 989
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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