Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_B10
(583 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 27 2.0
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 26 4.6
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 4.6
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 25 6.1
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 25 6.1
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 6.1
SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz... 25 6.1
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 25 6.1
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos... 25 8.1
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 25 8.1
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 25 8.1
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 316 LGEKSSQDFENLLKRATPYFKRIDDDFRAEWD 411
L E S+ D ENL K +P F ++ F+ D
Sbjct: 52 LSENSNSDSENLAKTLSPIFDNLESVFKKGTD 83
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 4.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 340 FENLLKRATPYFKRIDDDFRAEWDK 414
F + K+ P+ KRI D+ +EW +
Sbjct: 291 FYTISKKPEPFIKRIADNLVSEWSR 315
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 4.6
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +1
Query: 139 ADISADLILSGSKKNIAHGALFLKDNTIKSEYGASKDNFNHLMTTVKKDVEGLNDRIKDL 318
AD+S ++ SK+N H AL + S KD+ + ++ + ++ L D +D
Sbjct: 466 ADLSEQIVELESKRNDLHSALLEMGGNLTSLL-TKKDSIANKISDQSEHLKVLEDVQRDK 524
Query: 319 GEKSSQDFENLLKRAT 366
++ LLK T
Sbjct: 525 VSAFGKNMPQLLKLIT 540
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 176 LLPDKMRSALMSARFSVPGVQQP*IYSLIPL 84
LLPD + S + G+ P YSLI L
Sbjct: 648 LLPDSLNDLAGSFNIAADGISSPMAYSLIDL 678
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 430 SVDKVFKEFSHTLNEVIHYLAKIIDEVLQGTK 525
SVDKV + + L E ++ + E+L+GT+
Sbjct: 632 SVDKVLDQTAEALEEFVNTAPPKVQELLKGTE 663
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 475 VIHYLAKIIDEVLQGTKPIVDQIIKT 552
+I YLA I G+ + +QIIKT
Sbjct: 183 IIQYLAAIASSTTVGSSQVEEQIIKT 208
>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
L12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 206
Score = 25.4 bits (53), Expect = 6.1
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = -3
Query: 569 LDVSVNVFMI*STIGLVPCKTSSIILAK**MTSFRVCENSLNTLSTEISL*NLSHSALKS 390
L V V + + + I L P TSSIIL + FR+ L S N + S + +
Sbjct: 5 LKVVVTILNLPTPISLAPYFTSSIILK---YSMFRIASRQTRNLRALSSSKNWARSLVNT 61
Query: 389 SSIR 378
S R
Sbjct: 62 RSFR 65
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +1
Query: 253 FNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDF 396
F L+ T++ D+EGLN + + S + + ++R + +D+ F
Sbjct: 133 FQSLLKTLETDIEGLN-LVDHTHDPSDESIKQTVQRLRSSIEGLDEAF 179
>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 8.1
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 406 WDKFYKEISVDKVFKEFSHTLNEVIH-YLAKIIDEVLQGTKPIVDQIIKTFTETSNKILE 582
W Y + + + ++F + E H +L + DEV Q KP+V + I T + +LE
Sbjct: 147 WYFGYIPPAQESLLEDFEAKIEEQQHKHLENLGDEVEQDWKPLVIEQIPTRDDVEAILLE 206
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 118 TPGTEKRADISADLILSGSKKNIAHGALFLKDNTIKSE 231
TP T+K + S +SGS + A+ NT++ E
Sbjct: 468 TPVTKKEVETSKPPAVSGSTPPVNEAAVIESSNTLEKE 505
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 25.0 bits (52), Expect = 8.1
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = -2
Query: 561 FSECLYDLIDNRFGSLQNFIDNLS*IMNDLVQSV*KFFEYFVNGNFLVE-FIPFGSKVIV 385
F +C LI+ F S Q FI S I++ L + K FVN NFL+ F + + +
Sbjct: 101 FLKCCELLINGGFESPQQFISLNSAILSALHRISTKRPVLFVN-NFLISLFSGLANILQI 159
Query: 384 NTFEVWC 364
++ E++C
Sbjct: 160 DSDELYC 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,167
Number of Sequences: 5004
Number of extensions: 49030
Number of successful extensions: 162
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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