Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_B10
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_02_0117 - 6779121-6779582 36 0.024
11_06_0723 - 26688378-26688385,26689351-26689569,26690100-266901... 31 0.67
02_04_0259 - 21345100-21345891,21347081-21347516,21347602-21348161 31 0.67
07_01_0613 - 4535892-4536331,4536462-4536543,4537493-4537576,453... 29 3.6
01_01_1135 - 9003823-9004182,9004308-9004367,9004441-9004683,900... 29 3.6
05_03_0323 - 12424243-12424776 28 6.2
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101... 28 6.2
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090... 27 8.2
>05_02_0117 - 6779121-6779582
Length = 153
Score = 35.9 bits (79), Expect = 0.024
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +1
Query: 223 KSEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRA 402
+ Y S +++ L T V+GL++ + KS NLLK+A F+ R
Sbjct: 49 REAYYESPEDYPLLRTNNPVKVDGLSEEWVEKNSKSVIKTANLLKKADDSFEEFQKQVRK 108
Query: 403 EWDKFYKEISVD 438
E +K Y E+ +D
Sbjct: 109 EVEKGYYEVGMD 120
>11_06_0723 -
26688378-26688385,26689351-26689569,26690100-26690106,
26690194-26690256,26690329-26690400,26690507-26691681,
26692024-26692626,26692643-26692781
Length = 761
Score = 31.1 bits (67), Expect = 0.67
Identities = 21/84 (25%), Positives = 40/84 (47%)
Frame = +1
Query: 247 DNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEWDKFYKE 426
D + + TT+K+ VE ++ ++D EK ++ + A P E+++ ++
Sbjct: 325 DGYVNARTTLKQFVEQYDNALRDKVEKENKSDCKSFQEAIPCITHY------EFERQFQV 378
Query: 427 ISVDKVFKEFSHTLNEVIHYLAKI 498
+K FKEF L I+Y A +
Sbjct: 379 AYTNKKFKEFQDELRGKIYYYATL 402
>02_04_0259 - 21345100-21345891,21347081-21347516,21347602-21348161
Length = 595
Score = 31.1 bits (67), Expect = 0.67
Identities = 18/73 (24%), Positives = 34/73 (46%)
Frame = +1
Query: 148 SADLILSGSKKNIAHGALFLKDNTIKSEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEK 327
S L+L + +A + L D+ + +YG S ++D++GLN I + E
Sbjct: 89 SLQLVLFSRQWGLAESLVALADHQLMLDYGLSVALDAIWFLRTEQDLQGLNHLIGKIVES 148
Query: 328 SSQDFENLLKRAT 366
++DF + R +
Sbjct: 149 GAKDFARAILRTS 161
>07_01_0613 -
4535892-4536331,4536462-4536543,4537493-4537576,
4537669-4537845,4538192-4538351,4539357-4539685
Length = 423
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 385 DDDFRAEWDKFYKEISVDKVFKEFSHTLNEVIHYLAK 495
DD+FR +WD ++ K+ +EF +IH++ K
Sbjct: 189 DDEFRLKWDPM---LAYFKILEEFPQNGTMIIHWIKK 222
>01_01_1135 -
9003823-9004182,9004308-9004367,9004441-9004683,
9005207-9005305,9005807-9005986,9006090-9006164
Length = 338
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 271 TVKKDVEGLNDRIKDLGEKSSQDFENLLKRAT 366
T+++ E +ND K+LGE SS++ ++ L A+
Sbjct: 18 TLEEQQEKINDLRKELGEHSSEEIQDFLSDAS 49
>05_03_0323 - 12424243-12424776
Length = 177
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 229 EYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFE 345
+Y A +D M + +EG+ D + EK+ QDFE
Sbjct: 24 QYKALRDVLRREMNSRMDTLEGITDELSQKFEKTIQDFE 62
>02_04_0622 - 24508508-24508666,24509533-24509634,24510108-24510176,
24510294-24510362,24510428-24510502,24510584-24510688,
24511309-24511407,24511521-24513230,24513489-24513788,
24514748-24514846,24514962-24515079,24515166-24515251,
24515334-24515402,24515746-24515843,24516373-24516534,
24516779-24516787,24516970-24516991,24517620-24517712,
24517872-24517940,24518720-24518782,24518882-24519037,
24520895-24521230
Length = 1355
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 166 SGSKKNIAHGALFLKDNTIKSEYGASKDN 252
SG K N+ HG++FL +T ++ S DN
Sbjct: 996 SGKKMNMVHGSIFLDISTGRTSSDVSIDN 1024
>09_06_0107 +
20907560-20908491,20908511-20908625,20908967-20909058,
20909293-20909556,20910714-20911494
Length = 727
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 103 IHGCCTPGTEKRADISADLILSGSKK 180
I CC GTE R ++ AD ++ G K+
Sbjct: 282 IDECCREGTELRQELEADGMVMGRKR 307
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,410,174
Number of Sequences: 37544
Number of extensions: 272716
Number of successful extensions: 680
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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