Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_B10
(583 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ301446-1|ABC00999.1| 493|Homo sapiens TRIM5 protein. 31 2.2
DQ301445-1|ABC00998.1| 493|Homo sapiens TRIM5 protein. 31 2.2
DQ301447-1|ABC01000.1| 493|Homo sapiens TRIM5 protein. 30 5.2
DQ301444-1|ABC00997.1| 493|Homo sapiens TRIM5 protein. 30 5.2
BC134417-1|AAI34418.1| 363|Homo sapiens chromosome 20 open read... 30 5.2
AL034548-3|CAB81629.2| 363|Homo sapiens chromosome 20 open read... 30 5.2
AL034548-2|CAI19175.2| 328|Homo sapiens chromosome 20 open read... 30 5.2
AK097394-1|BAC05033.1| 363|Homo sapiens protein ( Homo sapiens ... 29 9.1
AK091924-1|BAC03772.1| 179|Homo sapiens protein ( Homo sapiens ... 29 9.1
AJ320497-1|CAC60121.1| 4523|Homo sapiens axonemal beta heavy cha... 29 9.1
>DQ301446-1|ABC00999.1| 493|Homo sapiens TRIM5 protein.
Length = 493
Score = 31.5 bits (68), Expect = 2.2
Identities = 27/119 (22%), Positives = 53/119 (44%)
Frame = +1
Query: 220 IKSEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFR 399
I+ E + K + T V D E L D I D E S + +NL K K + +
Sbjct: 163 IREEKASWKTQIQYDKTNVLADFEQLRD-ILDWEE--SNELQNLEKEEEDILKSLTN--- 216
Query: 400 AEWDKFYKEISVDKVFKEFSHTLNEVIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKI 576
+E + + S+ ++ + H L + L + +D V++ T+ + + +TF + ++
Sbjct: 217 SETEMVQQTQSLRELISDLEHXLQGSVMELLQXVDGVIKRTENVTLKKPETFPKNQRRV 275
>DQ301445-1|ABC00998.1| 493|Homo sapiens TRIM5 protein.
Length = 493
Score = 31.5 bits (68), Expect = 2.2
Identities = 27/119 (22%), Positives = 53/119 (44%)
Frame = +1
Query: 220 IKSEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFR 399
I+ E + K + T V D E L D I D E S + +NL K K + +
Sbjct: 163 IREEKASWKTQIQYDKTNVLADFEQLRD-ILDWEE--SNELQNLEKEEEDILKSLTN--- 216
Query: 400 AEWDKFYKEISVDKVFKEFSHTLNEVIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKI 576
+E + + S+ ++ + H L + L + +D V++ T+ + + +TF + ++
Sbjct: 217 SETEMVQQTQSLRELISDLEHXLQGSVMELLQXVDGVIKRTENVTLKKPETFPKNQRRV 275
>DQ301447-1|ABC01000.1| 493|Homo sapiens TRIM5 protein.
Length = 493
Score = 30.3 bits (65), Expect = 5.2
Identities = 27/119 (22%), Positives = 53/119 (44%)
Frame = +1
Query: 220 IKSEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFR 399
I+ E + K + T V D E L D I D E S + +NL K K + +
Sbjct: 163 IREEKASWKTQIQYDKTNVLADFEQLRD-ILDWEE--SNELQNLEKEEEDILKSLTN--- 216
Query: 400 AEWDKFYKEISVDKVFKEFSHTLNEVIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKI 576
+E + + S+ ++ + H L + L + +D V++ T+ + + +TF + ++
Sbjct: 217 SETEMVQQTQSLRELISDLEHXLQGSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRV 275
>DQ301444-1|ABC00997.1| 493|Homo sapiens TRIM5 protein.
Length = 493
Score = 30.3 bits (65), Expect = 5.2
Identities = 27/119 (22%), Positives = 53/119 (44%)
Frame = +1
Query: 220 IKSEYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFR 399
I+ E + K + T V D E L D I D E S + +NL K K + +
Sbjct: 163 IREEKASWKTQIQYDKTNVLADFEQLRD-ILDWEE--SNELQNLEKEEEDILKSLTN--- 216
Query: 400 AEWDKFYKEISVDKVFKEFSHTLNEVIHYLAKIIDEVLQGTKPIVDQIIKTFTETSNKI 576
+E + + S+ ++ + H L + L + +D V++ T+ + + +TF + ++
Sbjct: 217 SETEMVQQTQSLRELISDLEHXLQGSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRV 275
>BC134417-1|AAI34418.1| 363|Homo sapiens chromosome 20 open reading
frame 96 protein.
Length = 363
Score = 30.3 bits (65), Expect = 5.2
Identities = 22/93 (23%), Positives = 42/93 (45%)
Frame = +1
Query: 229 EYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEW 408
EY + LM +++ + D + DLGE + E+L + K+I AE
Sbjct: 218 EYSIKSVQISTLMRQLQQVKDSQQDELDDLGEMRRKVLESLSDKIQKKKKKILSSVVAET 277
Query: 409 DKFYKEISVDKVFKEFSHTLNEVIHYLAKIIDE 507
+ Y+E + K+++ S + + +IID+
Sbjct: 278 QRPYEEALLQKMWE--SQDFLKCMQRFREIIDQ 308
>AL034548-3|CAB81629.2| 363|Homo sapiens chromosome 20 open reading
frame 96 protein.
Length = 363
Score = 30.3 bits (65), Expect = 5.2
Identities = 22/93 (23%), Positives = 42/93 (45%)
Frame = +1
Query: 229 EYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEW 408
EY + LM +++ + D + DLGE + E+L + K+I AE
Sbjct: 218 EYSIKSVQISTLMRQLQQVKDSQQDELDDLGEMRRKVLESLSDKIQKKKKKILSSVVAET 277
Query: 409 DKFYKEISVDKVFKEFSHTLNEVIHYLAKIIDE 507
+ Y+E + K+++ S + + +IID+
Sbjct: 278 QRPYEEALLQKMWE--SQDFLKCMQRFREIIDQ 308
>AL034548-2|CAI19175.2| 328|Homo sapiens chromosome 20 open reading
frame 96 protein.
Length = 328
Score = 30.3 bits (65), Expect = 5.2
Identities = 22/93 (23%), Positives = 42/93 (45%)
Frame = +1
Query: 229 EYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEW 408
EY + LM +++ + D + DLGE + E+L + K+I AE
Sbjct: 183 EYSIKSVQISTLMRQLQQVKDSQQDELDDLGEMRRKVLESLSDKIQKKKKKILSSVVAET 242
Query: 409 DKFYKEISVDKVFKEFSHTLNEVIHYLAKIIDE 507
+ Y+E + K+++ S + + +IID+
Sbjct: 243 QRPYEEALLQKMWE--SQDFLKCMQRFREIIDQ 273
>AK097394-1|BAC05033.1| 363|Homo sapiens protein ( Homo sapiens
cDNA FLJ40075 fis, clone TESTI2000489. ).
Length = 363
Score = 29.5 bits (63), Expect = 9.1
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +1
Query: 229 EYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEW 408
EY + LM +++ + D + DLGE + E+L + K+I AE
Sbjct: 218 EYSIKSVQISTLMRQLQQVKDSQQDELDDLGEMRRKVLESLSDKIQKKKKKILSSVVAET 277
Query: 409 DKFYKEISVDKVFK 450
+ Y+E + K+++
Sbjct: 278 QRPYEEALLQKMWE 291
>AK091924-1|BAC03772.1| 179|Homo sapiens protein ( Homo sapiens
cDNA FLJ34605 fis, clone KIDNE2013489. ).
Length = 179
Score = 29.5 bits (63), Expect = 9.1
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +1
Query: 229 EYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEW 408
EY + LM +++ + D + DLGE + E+L + K+I AE
Sbjct: 83 EYSIKSVQISTLMRQLQQVKDSQQDELDDLGEMRRKVLESLSDKIQKKKKKILSSVVAET 142
Query: 409 DKFYKEISVDKVFK 450
+ Y+E + K+++
Sbjct: 143 QRPYEEALLQKMWE 156
>AJ320497-1|CAC60121.1| 4523|Homo sapiens axonemal beta heavy chain
dynein type 11 protein.
Length = 4523
Score = 29.5 bits (63), Expect = 9.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 379 RIDDDFRAEWDKFYKEISVDKVFKEFSHT 465
R++DD R DK KE+ +KV E S T
Sbjct: 1444 RVEDDVRRIVDKAVKELGTEKVITEISQT 1472
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,897,388
Number of Sequences: 237096
Number of extensions: 1480142
Number of successful extensions: 3286
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3286
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6042162242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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