Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_B07
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   1.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   1.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   5.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.9  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -1

Query: 158 SATSIIFWTT*FAYWSFIITWRALKNSRLSLK---PQS 54
           S T+II  T    +WS   TW +L NS +S+    PQS
Sbjct: 10  SVTAIIQGTQ-AQHWSRGNTWLSLDNSNMSMSSVGPQS 46


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -1

Query: 158 SATSIIFWTT*FAYWSFIITWRALKNSRLSLK---PQS 54
           S T+II  T    +WS   TW +L NS +S+    PQS
Sbjct: 10  SVTAIIQGTQ-AQHWSRGNTWLSLDNSNMSMSSVGPQS 46


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
 Frame = -1

Query: 494 HVTYVQAPRSHGSGACALYTYKCTITNI---HIMYKRRGEGHP 375
           + TY Q  + HGSG   +  Y+    +    H+ +     GHP
Sbjct: 90  NATYYQHQQDHGSGMDGMGGYRSASPSPGMGHMGHTPTPNGHP 132


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 14/65 (21%), Positives = 24/65 (36%)
 Frame = -3

Query: 477  GAALARFRSVRPLYLQMHNHKYSHNV*EAGGGTPAPSHQPTRSADVNTLRRLLQHRVGGR 298
            GAA A    + P    +H+  Y  +    G  +P P+    +S      ++  Q   G  
Sbjct: 1721 GAAEASAAGLHPNNTLLHSFMYHEHAMTEGCASPPPAATSMKSVSSRRRQQRKQQTPGDV 1780

Query: 297  RPDRA 283
              D +
Sbjct: 1781 ESDES 1785


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 14/65 (21%), Positives = 24/65 (36%)
 Frame = -3

Query: 477  GAALARFRSVRPLYLQMHNHKYSHNV*EAGGGTPAPSHQPTRSADVNTLRRLLQHRVGGR 298
            GAA A    + P    +H+  Y  +    G  +P P+    +S      ++  Q   G  
Sbjct: 1717 GAAEASAAGLHPNNTLLHSFMYHEHAMTEGCASPPPAATSMKSVSSRRRQQRKQQTPGDV 1776

Query: 297  RPDRA 283
              D +
Sbjct: 1777 ESDES 1781


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,833
Number of Sequences: 438
Number of extensions: 2438
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)