Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_B04
(507 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 157 9e-40
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 157 9e-40
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 0.92
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 27 1.2
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 4.9
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 4.9
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 4.9
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 25 4.9
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 6.5
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 6.5
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 25 8.6
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 157 bits (381), Expect = 9e-40
Identities = 75/165 (45%), Positives = 102/165 (61%)
Frame = +3
Query: 12 GLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGATEVTGDEYNVEPVDNGPGAFRCYLDVGL 191
GL N+ AAY TG Y G TE G+ E +++GP F+ +LDVGL
Sbjct: 91 GLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGL 150
Query: 192 ARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRS 371
RT+TG+RVFGAMKGA DGGL +PHS RFPG+D E+++ + E R +I+G HVAEYM
Sbjct: 151 KRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEM 210
Query: 372 LEQEDEDSFKRQFGKYIKIGVNPDDIETNYKKAHEAIRADPSHKK 506
L +DE+ +++QF I G+ D +E Y +A+ IR DPS +K
Sbjct: 211 LIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQK 255
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 157 bits (381), Expect = 9e-40
Identities = 75/165 (45%), Positives = 102/165 (61%)
Frame = +3
Query: 12 GLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGATEVTGDEYNVEPVDNGPGAFRCYLDVGL 191
GL N+ AAY TG Y G TE G+ E +++GP F+ +LDVGL
Sbjct: 91 GLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGL 150
Query: 192 ARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRS 371
RT+TG+RVFGAMKGA DGGL +PHS RFPG+D E+++ + E R +I+G HVAEYM
Sbjct: 151 KRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEM 210
Query: 372 LEQEDEDSFKRQFGKYIKIGVNPDDIETNYKKAHEAIRADPSHKK 506
L +DE+ +++QF I G+ D +E Y +A+ IR DPS +K
Sbjct: 211 LIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQK 255
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.9 bits (59), Expect = 0.92
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 378 QEDEDSFKRQFGKYIKIGVNPDDIETNYKKAHEAIRAD 491
+E+++S ++ K ++ V D ++KK +E IR+D
Sbjct: 1023 KEEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSD 1060
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 27.5 bits (58), Expect = 1.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 476 LMRFLIICFNIIWIYTDFDILSKLSLERIFVFL 378
L+ + F +IWIY + S +S+ IFVFL
Sbjct: 63 LLLLIPALFTLIWIYKYIEPHSLISIPGIFVFL 95
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 4.9
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = -3
Query: 235 PFMAPNTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSPVTSVAPV*RLSKPSL 74
PF +T P++ + +S HL S+ S LY S P S P L
Sbjct: 217 PFPRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLL 270
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 457 FVSISSGFTPILIYFPNCL 401
F+ I SG TPI+ FPN L
Sbjct: 499 FLYIQSGITPIINLFPNGL 517
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 4.9
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = -3
Query: 295 ASYPGNLLIECGTFKPPSTA-PFMAPNTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSP 119
+++P N + F ST+ P AP + +P+ KP++ N S+ + SSP
Sbjct: 375 STFP-NPSVASPAFPNSSTSNPSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRTSSP 433
Query: 118 VTSVA----PV*RLSKPSLCNNL 62
+ S A PV + S P L L
Sbjct: 434 LASNAENKPPVAQQSPPVLLPTL 456
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 25.4 bits (53), Expect = 4.9
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -2
Query: 452 FNIIWIYTDFDILSKLSLERIFVFLLKATHVLCHM*SKDVCSMYFCIKFL 303
F+ + +Y F +SKL + + FLL +T +L + + V YF + FL
Sbjct: 345 FSYLILYYFFLDISKLQMTSLTFFLLISTTILTLVPAPLVEFRYFLLPFL 394
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +3
Query: 360 YMRSLEQEDEDSFKRQFGKYIKIGVNPDDIETNYKKAHEA 479
+++ LEQ+ ++ ++GK + I V P+++ + K A
Sbjct: 525 WVQELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENA 564
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 354 AEYMRSLEQEDEDSFKRQFGKYIK 425
+EY+++L D SFK+ F K+I+
Sbjct: 948 SEYLQALSNLDSRSFKQFFQKFIQ 971
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 24.6 bits (51), Expect = 8.6
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 145 TGSTLYSSPVTSVAPV*RLSKPSLCNNLLASNRPVQ 38
TGS SS V S +SKPS N L +P+Q
Sbjct: 338 TGSDKLSSHVQSETENAPVSKPSKPNTLTEDEKPLQ 373
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,919
Number of Sequences: 5004
Number of extensions: 46662
Number of successful extensions: 163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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