Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_B04
(507 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 187 5e-48
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 186 1e-47
03_05_0996 - 29547974-29547977,29548442-29548620,29548827-295489... 32 0.23
03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570... 29 2.8
02_05_0870 - 32354117-32354416 29 2.8
10_08_0184 - 15570471-15570684,15571085-15571354,15571489-155717... 28 3.7
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 28 3.7
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 28 5.0
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 27 6.5
06_02_0100 + 11735424-11735958,11736168-11736916,11752859-117531... 27 6.5
04_03_0204 + 12643435-12644001 27 6.5
04_01_0156 - 1780395-1780686,1780773-1781248,1781263-1781678,178... 27 6.5
04_04_0126 + 22952577-22952871,22952912-22953519,22954125-229545... 27 8.7
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 27 8.7
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 187 bits (455), Expect = 5e-48
Identities = 86/166 (51%), Positives = 114/166 (68%)
Frame = +3
Query: 9 VGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGATEVTGDEYNVEPVDNGPGAFRCYLDVG 188
VGLTNYAAAYCTG D Y G E TG++Y VEP D FR LDVG
Sbjct: 88 VGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERR-PFRALLDVG 146
Query: 189 LARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMR 368
L RTTTG RVFGA+KGA+DGGL++PHS KRF G+ + K+ ++++HR +I+G HVA+YMR
Sbjct: 147 LIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMR 206
Query: 369 SLEQEDEDSFKRQFGKYIKIGVNPDDIETNYKKAHEAIRADPSHKK 506
S+ +E+ + F+ F +Y+K G++ D +E+ YKK H AIRADP+ K
Sbjct: 207 SMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAK 252
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 186 bits (452), Expect = 1e-47
Identities = 86/166 (51%), Positives = 113/166 (68%)
Frame = +3
Query: 9 VGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGATEVTGDEYNVEPVDNGPGAFRCYLDVG 188
VGLTNYAAAYCTG D Y G E TG++Y VEP D FR LDVG
Sbjct: 88 VGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERR-PFRALLDVG 146
Query: 189 LARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMR 368
L RTTTG RVFGA+KGA+DGGL++PHS KRF G+ + K+ ++++HR +I+G HVA+YMR
Sbjct: 147 LIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMR 206
Query: 369 SLEQEDEDSFKRQFGKYIKIGVNPDDIETNYKKAHEAIRADPSHKK 506
S+ +E+ + F+ F +Y+K G++ D +E YKK H AIRADP+ K
Sbjct: 207 SMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAK 252
>03_05_0996 -
29547974-29547977,29548442-29548620,29548827-29548905,
29549556-29549577,29550370-29550439,29550589-29550667,
29551252-29551268,29552214-29552295,29553540-29553630,
29554354-29554498,29554653-29554964
Length = 359
Score = 32.3 bits (70), Expect = 0.23
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = -3
Query: 337 MCALCTSALNFLDSASYPGNLLIECGTFKPPSTAPFMAPNTRAPVVVRAKPTSK*HLNAP 158
+ AL T L+F+ + ++P + CG+ PS T P VR P +P
Sbjct: 4 LLALSTPRLHFVAALNHPSSF--PCGSSPLPSLIQCRRRLTNRPATVRLSPAPSPCPMSP 61
Query: 157 GPLST-GSTLYSSPVTSVAPV*RLSKPSLC 71
PL+T Y+S +A LS S+C
Sbjct: 62 PPLNTVRCGRYTSTPLDIAACPPLSVLSIC 91
>03_02_0719 +
10654842-10654977,10655039-10655124,10655226-10657001,
10657782-10657926,10658017-10658735
Length = 953
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 19 LTMLLPTAL-VCCWQEDCCRGSA 84
L++L PT L CW DCC GS+
Sbjct: 691 LSVLEPTFLNESCWSSDCCSGSS 713
>02_05_0870 - 32354117-32354416
Length = 99
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 337 MCALCTSALNFLDSASYPGNLLIECGTFKPPSTAP 233
+C L T F + YP NLLI C +P T+P
Sbjct: 39 VCFLSTGYDGFKHTPPYPLNLLIVCRNQQPHGTSP 73
>10_08_0184 -
15570471-15570684,15571085-15571354,15571489-15571711,
15571809-15571875,15571996-15572137,15572226-15572290
Length = 326
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Frame = -2
Query: 443 IWIYTD------FDILSKLSLERIFVFLLKATHVLCHM*SKDV 333
+W+YTD D L++ ++ R+F+F+ K V+ H+ D+
Sbjct: 278 LWLYTDDRDVVDMDTLTRENIRRLFMFISKLPLVVLHVVDLDI 320
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 229 MAPNTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSP 119
M + P+ RAKP K N P P++ G + S P
Sbjct: 64 MLTSGAGPLTTRAKPKPKNRANPPVPIAPGRQILSIP 100
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +1
Query: 373 LSRKTKILSRDSLESISKSV*IQMILKQIIRKRMRQFVQTHHTR 504
+SR T +S D+ E + + ++ K+I++KR++QF + H R
Sbjct: 309 VSRDTYEVSDDTYEMV-----VPLLTKKIVKKRVKQFKRPHSDR 347
>12_02_0228 +
15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -3
Query: 166 NAPGPLSTGSTLYSSPVTSVAPV*RLSKPSLCNNLLASNRP 44
+APG S S TS P S P CN L ++N P
Sbjct: 851 SAPGSSPVFSLAVGSGTTSATPA-SASSPIFCNRLTSTNAP 890
>06_02_0100 +
11735424-11735958,11736168-11736916,11752859-11753118,
11760085-11760124
Length = 527
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = +3
Query: 312 NAEVHRAHIF-GLHVAEYMRSLEQEDEDSFKRQFGKYIKIGVNP----DDIETNYKKAHE 476
+AE A++ GL AEY R L+++ R + + NP DD+E + K+
Sbjct: 184 DAEAEAANMIRGLITAEYARLLQRQSNGRANRVYNGKLASRANPAKVDDDVEPSKKRKRA 243
Query: 477 AIRADP 494
+ P
Sbjct: 244 IAKGGP 249
>04_03_0204 + 12643435-12644001
Length = 188
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 304 LDSASYPGNLLIECGTFKPPSTA 236
LD+A Y G L EC PP TA
Sbjct: 67 LDAARYAGELRTECSLRPPPPTA 89
>04_01_0156 -
1780395-1780686,1780773-1781248,1781263-1781678,
1781904-1782111
Length = 463
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +3
Query: 312 NAEVHRAHIFGLHVAEYMRSLEQEDEDSFKRQFGKYIKIGVNP----DDIETNYK 464
+AE A + G+ AEY R L+++ R + + NP DD+ T+ K
Sbjct: 75 DAEAEAAKMIGVITAEYARLLQRQSNGQANRVYNGELTSWANPARGDDDVGTSKK 129
>04_04_0126 +
22952577-22952871,22952912-22953519,22954125-22954596,
22954882-22954955,22955559-22955937,22956659-22956711
Length = 626
Score = 27.1 bits (57), Expect = 8.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 7 GWV*LTMLLPTALVCCW 57
GW+ L +LL A+VCC+
Sbjct: 113 GWLSLVLLLAVAMVCCY 129
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Frame = -3
Query: 250 PPSTAPFMAPNTRAPVVVRAKPTSK*HL----NAPGPLSTGST 134
PP AP M P AP A PT+ L AP P ++ S+
Sbjct: 266 PPQLAPTMPPPAHAPAETPAPPTTPPALPPATTAPSPKNSSSS 308
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,845,093
Number of Sequences: 37544
Number of extensions: 312510
Number of successful extensions: 1006
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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